Documentation

AnalyzeThermodynamics

AnalyzeThermodynamics[{meltingAnalysis..}]⟹object

calculates Gibbs free energy at 37Celsius of a melting reaction using a series of melting curve analyses and a two-state van't Hoff model (bound and unbound).

AnalyzeThermodynamics[{thermodynamicData..}]⟹object

calculates the Gibbs free energy from the most recent melting point analysis linked to each given data.

AnalyzeThermodynamics[thermodynamicProtocol]⟹object

calculates the Gibbs free energy from the most recent melting point analysis linked to all of the data linked to the given protocol.

Details

Thermodynamic properties are computing by fitting Gibbs free energy relationship, -R*T*Log[Keq]ΔH-T*ΔS (equation (8-7) from Object[Report, Literature, "id:kEJ9mqa1Jr7P"]), to the given melting points and their respective equilibrium constants Keq.
Equilibrium constants Keq are computed at the half-bound state using the TargetConentrations from the thermodynamics protocol (equation (6-16) from Object[Report, Literature, "id:kEJ9mqa1Jr7P"]).

Input

Output

General Options

Method Options

Examples

Basic Examples (5)

Compute the binding entropy and enthalpy of a two-state from van't Hoff analysis:

Pull the melting point analyses from the given data objects:

Pull the melting point analyses from the protocol data:

Plot the melting point fit:

Given mixed list of inputs:

Options (3)

Name (1)

Name to be used as the name of Object[Analysis, Thermodynamics] generated by the analysis:

Output (1)

Return packet:

Template (1)

Use options from previous Thermodynamics analysis:

Messages (3)

BadEquilibrium (1)

All datas must have same reactions:

MissingConcentration (1)

All samples whose melting points are being used in the calculation must have concentrations:

TooFewPoints (1)

Thermodynamic analysis requires data for at least two different concentrations: