EmeraldSubsequences

EmeraldSubsequences[sequence,n]⟹subsequences

breaks the provides sequence into a list of overlapping subsequences of length n.

EmeraldSubsequences[sequence,n,Span[minIndex,maxIndex]]⟹subsequences

breaks the provides sequence into a list of overlapping subsequences of length n from the minIndex to the maxIndex.

EmeraldSubsequences[sequence]⟹subsequences

breaks the provides sequence into a list of overlapping subsequences from length 1 to the length of the sequence.

EmeraldSubsequences[sequence,Span[minIndex,maxIndex]]⟹subsequences

breaks the provides sequence into a list of overlapping subsequences of length 1 to the length of the sequence from the minIndex to the maxIndex.

EmeraldSubsequences[cmplex,n]⟹motifSubsequence

given a Structure, and a level n, returns a list of rules for each subsequence of each unique motif in the set of strands of the Structure.

EmeraldSubsequences[strands,n]⟹motifSubsequence

given a list of strands, and a level n, returns a list of rules for each subsequence of each unique motif in the set of strands.

Details

Given a Structure, and a level 5, returns a list of rules for each subsequence of the Structure:

Given a Structure, and a level 5, returns a list of rules for each subsequence of each unique motif in the set of strands of the Structure:

With CanonicalPairing off, subsequences will leave the subsequences in the alphabets of their source polymers:

With CanonicalPairing on, all of the subsequences will be transformed into DNA sequences using ToDNA:

This option works with Strand and Structure subsequence calls as well:

Given a Structure, and a level 5, returns a minimal set of rules for each subsequence of the Structure:

Given a Structure, and a level 5, returns a set of rules for each subsequence of the Structure including the reverse compliment subsequences:

Given a DNA Structure, and a level 5, returns a list of rules for each subsequence of the Structure:

Specify the minimum level of subsequences to consider when deconstructing:

Given a sequence that has a specified type, return a list of overlapping subsequences of length 2:

For invalid input sequence, will throw a message: