PlotCellCount

PlotCellCount[cellCounts]⟹plot

generates a graphical representation of the number of cells in cellCounts.

PlotCellCount[microscopeData]⟹plot

generates a graphical representation of the number of cells in microscopeData.

PlotCellCount[image, components]⟹plot

generates a graphical representation of the number of cells in image.

Details

Input

Output

Data Specifications Options

Frame Options

Grid Options

Image Format Options

Plot Labeling Options

Plot Range Options

Plot Style Options

Plot Type Options

General Options

Messages

	imageNotFound	No image was found in this packet.
	NoCounts	One or more of your inputs does not have calculated cell counts. Please use AnalyzeCellCount to count the cells for your image or exclude your image from plotting if no cells can be counted.

Examples

Basic Examples (3)

Plot components of over a microscope image:

Plot cell count from a link:

Plot a list of cell counts:

Additional Examples (3)

Input Type (3)

Plot groups of cell counts:

Plot microscope data:

Plot cell counts using an image and its components:

Options (36)

AspectRatio (1)

Set the height to width ratio of a cell counts bar chart:

Background (1)

Format the displayed area behind the plot:

BarSpacing (1)

Specify the distance between adjacent bars in a cell counts BarChart:

BlendingFraction (1)

Change the alpha blending of image components into the cell image:

CellCount (1)

Specify the number of cells in the BrightField image:

CellCountError (1)

Specify the error associated with the cells count in the BrightField image:

ChartBaseStyle (1)

Specify the base style of a cell counts BarChart:

ChartElementFunction (1)

Specify the element styling function for a PieChart:

ChartLabelOrientation (1)

Specify the chart label orientation for the bar chart:

ChartLabels (1)

Specify the chart labels for the bar chart:

ChartLayout (1)

Plot cumulative cell counts in a cell counts BarChart:

ChartStyle (1)

Specify the style of a cell counts BarChart:

ColorFunction (1)

Specify the colormap used to format chart elements in the plot:

ColorFunctionScaling (1)

Specify whether the colormap is normalized to a [0-1] interval:

DisplayCellCount (1)

Turn off labeling of cell counts:

Epilog (1)

Draw graphics primitives in front of the plot:

Frame (1)

Specify which axes are drawn:

FrameLabel (1)

Specify the frame label for the bar chart:

FrameStyle (1)

Format the drawn axes:

FrameTicks (1)

Set the tick mark positions:

FrameTicksStyle (1)

Set the tick mark font:

GridLines (1)

Specify position at which to draw guide lines:

GridLinesStyle (1)

Format the drawn guide lines:

ImageSize (1)

Resize the plot:

LabelingFunction (1)

Position the ChartLabels:

LabelStyle (1)

Set the label font:

Legend (1)

Add a legend:

MaxSingleCellArea (1)

Specify the maximum size for a component to be considered a cell:

MinSingleCellArea (1)

Specify the minimum size for a component to be considered a cell:

PlotLabel (1)

Label the bar chart:

PlotRange (1)

Specify the plot range for the bar chart:

PlotType (2)

Plot a pie chart of sizes of cell components:

Plot the text stats of the cell counts:

Prolog (1)

Draw graphics primitives behind the plot:

SectorOrigin (1)

Specify the angular orientation of a PieChart:

SingleCell (1)

Only label single celled component:

Messages (2)

imageNotFound (1)

Throw an error if there is no image to generate components from:

NoCounts (1)

Throw an error if one or more of your inputs does not have calculated cell counts: