Explicitly specify which downsampling analysis object linked to the input to use for plotting. Automatic defaults to the most recent downsampling analysis:

Specify one or more ranges of m/z values to exclude from a MassSpectrum plot:

Specify one or more ranges of m/z values to exclude from a waterfall plot:

By default, ExtractedIonMassRange will default to the entire range of m/z, producing a plot equivalent to the TotalIonCurrent:

Specify a list of one or more m/z ranges:

Specify the function by which slices of m/z should be reduced into a single trace. Here, track the maximal intensity at each time point for the given ranges of m/z:

Specify the function by which slices across a time range should be reduced into a single trace. Here, we take the maximal intensity at each m/z for the given time range:

By default, MassSpectrumTimeRange will default to the entire time range and the mass spectrum will reflect the average intensity across all time points:

Specify a list of one or more time ranges to extract mass spectra from:

By default, seven waterfall slices at evenly spaced time points are drawn when PlotType->WaterfallPlot:

Draw only five waterfall slices:

Plot peaks picked from a mass spectrum. The plot will set PlotType and MassSpectrumTimeRange to match the peak-picking analysis automatically:

Plot peaks picked from an extracted ion chromatogram. The plot will set PlotType and ExtractedIonMassRange to match the peak-picking analysis automatically:

Plot the absorbance chromatogram collected alongside LCMS data:

Plot the total ion current (TIC), the total mass spectrum intensity at each time point:

Plot the base peak chromatogram (BPC), the maximum mass spectrum intensity at each time point:

Plot the average mass spectrum (MS) between 2.0 and 2.5 minute elution times:

Plot the extracted ion chromatogram (EIC) of average intensity for m/z between 685 and 688:

Generate a waterfall plot showing the evolution of mass spectra as a function of elution time:

Set ShowNoiseThreshold to True with PlotType of MassSpectrum to show the noise threshold (set during downsampling) below which intensity values are treated as zero:

By default, each waterfall represents the average of even slices of the input data on the time axis:

Generate a waterfall plot showing the maximum mass spectra intensities for evenly-spaced slices in time:

When available, PlotChromatographyMassSpectra will use the Absorbance chromatogram as a reference for elution time with PlotType->WaterfallPlot:

Disable the waterfall plot reference by setting WaterfallReferencePlot to None:

Error and return $Failed if for some reason the linked Downsampled data file does not resolve to a sparse array:

Downsampled data is required for plotting. If an object is missing downsampled data, please run AnalyzeDownsampling on it to precompute data for plotting:

Downsampled data is required for plotting. Newly updated objects will be downsampled automatically by the ECL. Please check back later, or run AnalyzeDownsampling if results are needed immediately:

Error and return $Failed if for some reason the linked Downsampled data file has inconsistent dimensions with its sampling points:

Error shows if the AbsorbanceChromatogram is requested from a data object with an empty Absorbance field:

Warning shows if a reference plot is requested that cannot be found, e.g. if the AbsorbanceChromatogram is requested for a data object with an empty Absorbance field: