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RepeatingMatrix

RepeatingMatrix[sequence,k]matrix

this function takes a sequence and returns a matrix descirbing if the ovelapping subsequenes of length k from start to finish that are repeated where 1 specifies a repeat, and 0 specifies a unique subsequence.

RepeatingMatrix[sequence,k,Span[m,n]]matrix

this function takes a sequence and returns a matrix descirbing if the ovelapping subsequenes of length k in the range from position m to n are repeated where 1 specifies a repeat, and 0 specifies a unique subsequence.

Details

    Input
    Output
    General Options
    Attributes
  • Listable

Examples

Basic Examples  (3)

Repeating matrix for 1-mer repeats:

Repeating matrix for 3-mer repeats:

Repeating matrix for 3-mer repeats in a peptide:

Options  (2)

Degeneracy  (1)

Can set degeneracy:

Polymer  (1)

Can specify a polymer type:

Attributes  (1)

Listable  (1)

Function is listable: