Documentation

SequenceQ

SequenceQ[seq]⟹out

returns True if the provided sequence matches the given Polymer type.

Details

Automatic will attempt to match the provided string to any known polymer type.

Input

Output

General Options

Examples

Basic Examples (4)

Tests if a given input is a oligomer sequence:

Works on any polymer type including RNA:

Or even peptides:

But will return false for anything that's not a known oligomer sequence:

Additional Examples (3)

Can recognize both explicitly and implicitly typed sequences:

Named motifs are accepted by sequence as well:

Numeric sequences are also OK:

Options (15)

AlternativeEncodings (2)

Alternative coding alphabets for the polymer will be checked when AlternativeEncodings is set to True:

If AlternativeEncodings is set to False, then alternative coding alphabets for the polymer will not be permitted in the sequence:

Degeneracy (4)

If Degeneracy is set to true then degenerate Monomers will be permitted in the sequence:

If Degeneracy is set to false, then degenerate Monomers will not be permitted in the sequence:

Numeric sequences are rejected when Degeneracy is set to False:

Numeric sequences are accepted when Degeneracy is set to True:

Exclude (2)

Exclude takes a list of Monomers that should not be permitted in the sequence:

Exclude takes a list of Monomers that should not be permitted in the sequence:

Map (3)

If Map is set to True, listable behavior works as normal:

If Map is set to False, will test to see if all of the sequences are of the same polymer:

If Map is set to False, will test to see if all of the sequences are of the same polymer:

Polymer (4)

Providing the polymer type will test of the sequence is composed of only Monomers in the polymer's alphabet:

If the provided type doesn't match the sequence, SequenceQ will return false:

Works with explicitly typed sequence as well:

Peptides for instance work as well:

Attributes (2)

Listable (2)

The Function is listable:

The function is listable: