ToPeptide

ToPeptide[proteinSeq]⟹peptide

converts the proteinSeq in the single letter amino acid abbreviation format to the peptide the triple letter format.

Details

The input in this case can match a version of _?PeptideQ that allows for the AlternativeEncodings, eg. the single letter amino acid abbreviations.
The AlternativeEncodings can be found by evaluating the following code: AlternativeEncodings/.Parameters[Peptide]

Input

Output

General Options

Examples

Basic Examples (2)

Convert a single implicitly typed protein sequence in the single letter amino acid form into an explicitly typed Peptide in the triple letter abbreviation form:

Convert a single explicitly typed protein sequence in the single letter amino acid form into an explicitly typed Peptide in the triple letter abbreviation form:

Additional Examples (1)

The function can handle peptide sequences specified in a mix of the single letter and triple letter amino acid abbreviation forms:

Options (7)

AlternativeEncodings (2)

Alternative coding alphabets for the polymer will be checked when AlternativeEncodings is set to True:

If AlternativeEncodings is set to False, then alternative coding alphabets for the polymer will not be permitted in the sequence:

Consolidate (2)

If set to true, will consolidate sequences in a strand into a single sequence:

If set to false, will leave rge sequences and motif infomation in place:

ExplicitlyTyped (3)

Return a peptide sequence that is explicitly typed:

Return an explicitly typed peptide sequence from a provided explicitly typed peptide sequence with a motif name:

Attributes (1)

Listable (1)

Convert several single protein sequences in the single letter amino acid form into explicitly typed Peptides in the triple letter abbreviation form: