Documentation

ToStrand

ToStrand[seq]⟹str

returns a single strand containing one or more motifs, specified by seq.

ToStrand[seqs]⟹str

returns a list of strands where each strand contains the motifs defined in the sublist seqs.

ToStrand[struct]⟹strs

extracts the list of strands from 'struct'.

Details

List of sequence inputs are treated as motifs in a single strand
Use double list to receive multiple strands
Listable over Polymer and Motif options
Options will have their dimensions expanded to match input list
Same Labels are appeneded with integers to make all labels unique

Input

Output

General Options

Examples

Basic Examples (5)

Format a sequence as a Strand:

Pull strands out of a Structure:

Create Strand of given length:

Turn a list of sequences into a Strand with multiple motifs. Use Map option to return list of strands:

Specify polymer type and motif name:

Additional Examples (5)

Peptide input:

Mixed list of inputs:

Determines polymer type when sequence is non-ambiguous:

Given a structure with multiple strands:

Given list of structures:

Options (6)

Map (1)

Given a list of strands, use Map->True to return a list of strands instead of a single Strand with multiple motifs:

Motif (1)

Specify motif name:

Polymer (1)

Specify polymer type:

Replace (3)

Use Replace option to replace paired bases with "X":

Given bonds in StrandSpan form:

Nothing gets replaced if no paired bases present:

Messages (3)

InvalidSequence (3)

Given invalid sequence:

Given invalid strand:

Given invalid structure: