Object[Simulation, MeltingCurve]
A simulation to predict the melting and cooling curves for a given nucleic acid.
Organizational Information
Name
Name of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: A string.
ID
ID of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: The ID of this object.
Object
Object of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Object[Simulation, MeltingCurve, _String]
Pattern Description: The object reference of this object.
Type
Type of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Object[Simulation, MeltingCurve]
Pattern Description: Object[Simulation, MeltingCurve]
Notebook
Notebook this object belongs to.
Format: Single
Class: Link
Programmatic Pattern: _Link
Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
Relation: Object[LaboratoryNotebook][Objects]
Status
The current status of the simulation.
Format: Single
Class: Expression
Programmatic Pattern: ProtocolStatusP
Author
The person who requested this simulation.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[User][SimulationsAuthored]
DateConfirmed
The date on which the simulation first entered processing or a backlog.
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
DateEnqueued
The date on which the simulation first entered processing or a backlog.
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
DateStarted
Date when this simulation was started.
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
DateCompleted
Date when this simulation was completed.
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
DateCanceled
Date when this simulation was canceled.
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
TimeElapsed
The time that was required to complete the simulation.
Format: Computable
Programmatic Pattern: GreaterEqualP[0 Day]
Expression: SafeEvaluate[{Field[DateCompleted], Field[DateStarted]}, Computables`Private`timeElapsed[Field[DateCompleted], Field[DateStarted]]]
Option Handling
UnresolvedOptions
The unresolved options entered into the simulation function that generated this object.
Format: Single
Class: Compressed
Programmatic Pattern: {_Rule...}
ResolvedOptions
The options resolved automatically by this simulation or entered by the requestor.
Format: Single
Class: Compressed
Programmatic Pattern: {_Rule...}
General
UnboundState
The initial unbound state of the strands and their concentrations.
Format: Single
Class: Expression
Programmatic Pattern: StateP
HighTemperature
The maximum temperature used in the simulation.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
LowTemperature
The minimum temperature used in the simulation.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
TemperatureStep
The stepwise change in temperature from one temperature point in the simulation to the next temperature point.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Celsius]
TemperatureRampRate
The rate of change from one temperature point in the simulation to the next temperature point.
Format: Single
Class: Real
Unit: 1 degree Celsius per second
Programmatic Pattern: 0 Celsius
Hold[GreaterP[---------]]
Second
EquilibrationTime
The length of time for which kinetics were simulated at the high and low temperature extremes, to allow for equilibration.
Format: Single
Class: Real
Unit: 1 second
Programmatic Pattern: GreaterEqualP[0 Second]
StepEquilibriumTime
The length of time for which kinetics were simulated at each temperature point during the up and down temperature sweeps.
Format: Single
Class: Real
Unit: 1 second
Programmatic Pattern: GreaterEqualP[0 Second]
LabeledStructures
The structures of interest that have been selected to be plotted by this simulation.
Format: Multiple
Class: Expression
Programmatic Pattern: StructureP
ReactionMechanism
The ReactionMechanism being simulated over the temperature ranges.
Format: Single
Class: Expression
Programmatic Pattern: ReactionMechanismP
Simulation Results
MeltingCurve
Simulated thermodynamic trajectory of the melting curve of an oligomer with rising temperature.
Format: Single
Class: Compressed
Programmatic Pattern: ThermodynamicTrajectoryP
CoolingCurve
Simulated thermodynamic trajectory of the cooling curve of an oligomer with falling temperature.
Format: Single
Class: Compressed
Programmatic Pattern: ThermodynamicTrajectoryP
Experimental Results
ExperimentalData
Data from experiments where the molocules and conditions match this simulation.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Last modified on Mon 26 Sep 2022 15:43:53