ECL`

PlotReactionMechanism

PlotReactionMechanism[Network]⟹Plot

converts a reaction Network into a Plot displaying all reactions and rates.

Details

Second-order reactions are represented by black circles that multiple things go into and out of.
Rate constants are included as tooltips on edges.
If there are an unreasonably large number of reactions, PlotReactionMechanism will not render each Structure; instead it will draw a gray circle with the Structure as a tooltip

Input

Output

Data Specifications Options

Image Format Options

Plot Style Options

General Options

Examples

open allclose all

Basic Examples (4)

Plot a ReactionMechanism:

Plot a ReactionMechanism link:

Plot a ReactionMechanism model:

Plot a ReactionMechanism with reversible reactions:

Additional Examples (1)

If you specify both Input and Output species, a path between the two will be highlighted in the plot:

Options (7)

DirectedEdges (1)

Remove the direction of the edges:

Disks (1)

Display disks instead of structures. Useful for large mechanisms:

Display (1)

Resolve each strand and structure separately as either MotifForm or StructureForm:

NetworkInput (1)

Specify input to network, which will be highlighted in the plot:

NetworkOutput (1)

Specify output of network, which will be highlighted in the plot:

Style (1)

Display as Vopert graph:

Tooltip (1)

Do not show mouseover reactions:

Last modified on Thu 21 Aug 2025 08:34:10