Model[Molecule, Protein, Antibody]
Model information for a Y-shaped immune component that targets a specific antigen.
Organizational Information
Name
Name of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: A string.
ID
ID of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: The ID of this object.
Object
Object of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Model[Molecule, Protein, Antibody, _String]
Pattern Description: The object reference of this object.
Type
Type of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Model[Molecule, Protein, Antibody]
Pattern Description: Model[Molecule, Protein, Antibody]
Notebook
Notebook this object belongs to.
Format: Single
Class: Link
Programmatic Pattern: _Link
Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
Relation: Object[LaboratoryNotebook][Objects]
Synonyms
List of possible alternative names this model goes by.
Format: Multiple
Class: String
Programmatic Pattern: _String
Authors
The people who created this model.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[User]
Molecule
The chemical structure that represents this molecule.
Format: Single
Class: Expression
Programmatic Pattern: MoleculeP | _?StructureQ | _?StrandQ
UNII
Unique Ingredient Identifier of this molecule, as given by the unified identification scheme of the FDA.
Format: Single
Class: String
Programmatic Pattern: _String
InChI
The International Chemical Identifer (InChI) that uniquely identifies this molecule.
Format: Single
Class: String
Programmatic Pattern: InChIP
InChIKey
The hashed version of the International Chemical Identifer (InChI) that uniquely identifies this molecule.
Format: Single
Class: String
Programmatic Pattern: InChIKeyP
CAS
Chemical Abstracts Service (CAS) registry number for this molecule.
Format: Single
Class: String
Programmatic Pattern: _String
IUPAC
International Union of Pure and Applied Chemistry (IUPAC) name for this molecule.
Format: Single
Class: String
Programmatic Pattern: _String
Species
The source species that this protein is found in.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Species]
PDBIDs
The list of Protein Data Bank IDs for any structures of this protein that have been previously reported in literature or are publically available.
Format: Multiple
Class: String
Programmatic Pattern: PDBIDP
Antibodies
Antibodies that are known to bind to this protein.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Transcripts
RNA templates that synthesize this protein inside of a cell.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule, Transcript][Proteins]
SecondaryAntibodies
Secondary antibody models that bind to this antibody and can be used for labeling.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Inventory
DefaultSampleModel
Specifies the model of sample that will be used if this model is specified to be used in an experiment.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample]
Physical Properties
MolecularFormula
Chemical formula of this molecule (e.g. H2O, NH2, etc.).
Format: Single
Class: String
Programmatic Pattern: _String
DetectionLabel
Indicates whether this molecule (e.g. Alexa Fluor 488) can be attached to another molecule and act as a tag that can indicate the presence and amount of the other molecule.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
AffinityLabel
Indicates whether this molecule has high binding capacity with certain material and can be attached to another molecule (e.g. His Tag).
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
DetectionLabels
Indicates the tags (e.g. Alexa Fluor 488) that the molecule contains, which can indicate the presence and amount of the molecule.
Format: Multiple
Class: Link
Programmatic Pattern: ObjectP[Model[Molecule]]
Relation: Model[Molecule]
AffinityLabels
Indicates the tags that the molecule contains (e.g. His Tag), which has high binding capacity with other materials.
Format: Multiple
Class: Link
Programmatic Pattern: ObjectP[Model[Molecule]]
Relation: Model[Molecule]
Targets
Target molecules (e.g. proteins or antibodies) to which this molecule binds selectively.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
State
The physical state of a pure sample of this molecule at room temperature and pressure.
Format: Single
Class: Expression
Programmatic Pattern: Solid | Liquid | Gas
Density
The density of a pure sample of this molecule at room temperature and pressure.
Format: Single
Class: Real
Unit: 1 gram per milliliter
Programmatic Pattern: 0 Gram
Hold[GreaterP[------ Milli]]
Liter
ExtinctionCoefficients
A measure of how strongly this molecule absorbs light at a particular wavelength.
Format: Multiple
[Wavelength]
Header: Wavelength
Class: VariableUnit
[ExtinctionCoefficient]
Header: ExtinctionCoefficient
Class: VariableUnit
Fluorescent
Indicates if this molecule can re-emit light upon excitation.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
FluorescenceExcitation Maximums
The wavelengths corresponding to the highest peak of each Fluorescent moiety's excitation spectrum.
Format: Multiple
Class: Real
Unit: 1 nanometer
Programmatic Pattern: GreaterP[0 Nanometer]
FluorescenceEmissionMaximums
For each member of FluorescenceExcitationMaximums, the corresponding highest peak of the fluorescent moiety's emission spectrum.
Format: Multiple
Class: Real
Unit: 1 nanometer
Programmatic Pattern: GreaterP[0 Nanometer]
MolecularWeight
The molecular weight of this molecule (the mass of one mole of the molecule).
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
ExactMass
The most abundant mass of the molecule calculated using the natural abundance of isotopes on Earth.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
StructureImageFile
An image depicting the molecule's chemical structure.
Format: Single
Class: Link
Programmatic Pattern: ObjectP[Object[EmeraldCloudFile]]
Relation: Object[EmeraldCloudFile]
StructureFile
A file that contains the molecule's chemical structure.
Format: Single
Class: Link
Programmatic Pattern: ObjectP[Object[EmeraldCloudFile]]
Relation: Object[EmeraldCloudFile]
MeltingPoint
Melting temperature of a pure sample of this molecule at atmospheric pressure.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
BoilingPoint
Temperature at which a pure sample of this molecule boils under atmospheric pressure.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
VaporPressure
Vapor pressure of a pure sample of this molecule at room temperature.
Format: Single
Class: Real
Unit: 1 kilopascal
Programmatic Pattern: GreaterEqualP[0 Kilo Pascal]
Viscosity
The viscosity of a pure sample of this molecule at room temperature.
Format: Single
Class: Real
Unit: 1 second pascal
Programmatic Pattern: GreaterEqualP[0 Pascal Second]
pKa
The logarithmic acid dissociation constants of a pure sample of this molecule at room temperature.
Format: Multiple
Class: Real
Programmatic Pattern: NumericP
NMRSolventPeak
The known chemical shift for a given nucleus for this molecule.
Format: Multiple
[Nucleus]
Header: Nucleus
Class: String
[ChemicalShift]
Header: ChemicalShift
Class: Real
Unit: 1 part per million
Chiral
Indicates if this molecule is a enantiomer, that cannot be superposed on its mirror image by any combination of rotations and translations.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Racemic
Indicates if this molecule represents equal amounts of left- and right-handed enantiomers of a chiral molecule.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
EnantiomerForms
If this molecule is racemic (Racemic -> True), indicates models for its left- and right-handed enantiomers.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule]
RacemicForm
If this molecule is one of the enantiomers (Chiral -> True), indicates the model for its racemic form.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule]
EnantiomerPair
If this molecule is one of the enantiomers (Chiral -> True), indicates the model for its non-superimposable mirror imaged molecule (stereoisomer).
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule]
pH
The logarithmic concentration of hydrogen ions of a pure sample of this molecule at room temperature and pressure.
Format: Single
Class: Real
Programmatic Pattern: RangeP[0, 14]
Organism
The organism in which the antibody was raised. Determines the type of secondary antibody required for labeling.
Format: Single
Class: Expression
Programmatic Pattern: AntibodyOrganismP
Isotype
The subgroup of immunoglobulin this antibody belongs to, based on variations within the constant regions of its heavy and/or light chains.
Format: Single
Class: Expression
Programmatic Pattern: AntibodyIsotypeP
Clonality
Specifies whether the antibody is produced by one type of cells to recognize a single epitope (monoclonal) or several types of immune cells to recognize multiple epitopes (polyclonal).
Format: Single
Class: Expression
Programmatic Pattern: AntibodyClonalityP
Epitopes
For each member of Targets, the part of the target antigen that this antibody attaches itself to, with the sequence information of the protein segment and its binding position range.
Format: Multiple
Class: Expression
Programmatic Pattern: {{_Strand, GreaterP[0], GreaterP[0]}..}
Health & Safety
Radioactive
Indicates if this molecule emits substantial ionizing radiation.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Ventilated
Indicates if a pure sample of this molecule must be handled in a ventilated enclosures.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Flammable
Indicates if a pure sample of this molecule is easily set aflame at room temperature and pressure.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Acid
Indicates if pure samples of this molecule are strong acids (pH <= 2).
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Base
Indicates if pure samples of this molecule are strong acids (pH >= 12).
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Pyrophoric
Indicates if pure samples of this molecule can ignite spontaneously upon exposure to air.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
WaterReactive
Indicates if pure samples of this molecule react spontaneously upon exposure to water.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Fuming
Indicates if pure samples of this molecule emit fumes spontaneously when exposed to air.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
HazardousBan
Indicates this molecule is currently banned from usage in the ECL because the facility isn't yet equiped to handle it.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
ExpirationHazard
Indicates if pure samples of this molecule become hazardous once they are expired and must be automatically disposed of when they pass their expiration date.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
ParticularlyHazardous Substance
Indicates if special precautions should be taken in handling this molecule, as indicated by the MSDS classification.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
DrainDisposal
Indicates if this molecule may be safely disposed down a standard drain.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Pungent
Indicates if pure samples of this molecule have a strong odor.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
MSDSRequired
Indicates if an MSDS is required for this molecule.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
MSDSFile
The PDF of the MSDS (Materials Saftey Data Sheet) of this molecule.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[EmeraldCloudFile]
NFPA
The National Fire Protection Association (NFPA) 704 hazard diamond classification for this molecule.
Format: Single
Class: Expression
Programmatic Pattern: NFPAP
DOTHazardClass
The Department of Transportation hazard classification for this molecule.
Format: Single
Class: String
Programmatic Pattern: DOTHazardClassP
BiosafetyLevel
The Biosafety classification for this molecule.
Format: Single
Class: Expression
Programmatic Pattern: BiosafetyLevelP
Storage Information
LightSensitive
Indicates if this molecule reacts or degrades in the presence of light.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Compatibility
IncompatibleMaterials
A list of materials that would be damaged if wetted by this molecule.
Format: Multiple
Class: Expression
Programmatic Pattern: MaterialP | None
LiquidHandlerIncompatible
Indicates if pure samples of this molecule cannot be reliably aspirated or dispensed on an automated liquid handling robot.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
PipettingMethod
The pipetting parameters used to manipulate pure samples of this model.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Method, Pipetting]
UltrasonicIncompatible
Indicates if pure samples of this molecule cannot be performed via the ultrasonic distance method due to vapors interfering with the reading.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
FluorescenceLabelingTarget
The types of molecules that cause fluorescence enhancement upon binding to this fluorophore.
Format: Multiple
Class: Expression
Programmatic Pattern: FluorescenceLabelingTargetTypeP
Experimental Results
ReferenceNMR
Data that exemplify the expected NMR spectrum for this molecule.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
ReferenceMassSpectra
Data that exemplify the expected mass spectrometry spectrum for this molecule.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
ReferenceChromatographs
Data that exemplify expected analytical HPLC traces for this molecule.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
ReferenceTLC
Data that exemplify expected thin layer chromatography results for this molecule.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
Analysis & Reports
LiteratureReferences
Literature references that discuss this molecule.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Report, Literature][References]
General
AssayTypes
Types of experiments in which this antibody is known to perform well.
Format: Multiple
Class: Expression
Programmatic Pattern: AntibodyAssayCompatibilityP
RecommendedDilution
The dilution that is recommended for use of this antibody in a capillary electrophoresis western blot assay.
Format: Single
Class: Real
Programmatic Pattern: RangeP[0, 1, Inclusive -> Right]
Last modified on Mon 26 Sep 2022 15:43:55