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Model[Virus]

Model information for a small infectious agent that only replicates inside the living cells of an organism.

Organizational Information

    Name

    Name of this Object.
    Format: Single
    Class: String
    Programmatic Pattern: _String
    Pattern Description: A string.

    ID

    ID of this Object.
    Format: Single
    Class: String
    Programmatic Pattern: _String
    Pattern Description: The ID of this object.

    Object

    Object of this Object.
    Format: Single
    Class: Expression
    Programmatic Pattern: Model[Virus, _String]
    Pattern Description: The object reference of this object.

    Type

    Type of this Object.
    Format: Single
    Class: Expression
    Programmatic Pattern: Model[Virus]
    Pattern Description: Model[Virus]

    Notebook

    Notebook this object belongs to.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
    Relation: Object[LaboratoryNotebook][Objects]

    Synonyms

    List of possible alternative names this model goes by.
    Format: Multiple
    Class: String
    Programmatic Pattern: _String

    Authors

    The people who created this model.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[User]

    GenomeType

    The type of genetic material carried by the virus.
    Format: Single
    Class: Expression
    Programmatic Pattern: ViralGenomeP

    Taxonomy

    The taxonomic class of the virus as defined by its phenotypic characteristics.
    Format: Single
    Class: Expression
    Programmatic Pattern: ViralTaxonomyP

    LatentState

    The state of the virus in a latently infected cell.
    Format: Single
    Class: Expression
    Programmatic Pattern: LatentStateP

    ViralTranscripts

    All of the transcripts this virus is known to produce, along with the timing of their production during infection (defined by ViralLifeCycleP).
    Format: Multiple

    [[1]] Transcripts

    [[2]] Production Stage

      Header: Production Stage
      Class: Expression
      Programmatic Pattern: ViralLifeCycleP

Inventory

    DefaultSampleModel

    Specifies the model of sample that will be used if this model is specified to be used in an experiment.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Relation: Model[Sample]

Physical Properties

    CapsidGeometry

    A description of the virus's capsid structure.
    Format: Single
    Class: Expression
    Programmatic Pattern: CapsidGeometryP

    Height

    The height of the virion in micro meters.
    Format: Single
    Class: Real
    Unit: 1 micrometer
    Programmatic Pattern: GreaterP[0 Meter Micro]

    Width

    The width of the virion in micro meters.
    Format: Single
    Class: Real
    Unit: 1 micrometer
    Programmatic Pattern: GreaterP[0 Meter Micro]

    pH

    The logarithmic concentration of hydrogen ions of a pure sample of this molecule at room temperature and pressure.
    Format: Single
    Class: Real
    Programmatic Pattern: RangeP[0, 14]

Health & Safety

    Radioactive

    Indicates if this molecule emits substantial ionizing radiation.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Ventilated

    Indicates if a pure sample of this molecule must be handled in a ventilated enclosures.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Flammable

    Indicates if a pure sample of this molecule is easily set aflame at room temperature and pressure.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Acid

    Indicates if pure samples of this molecule are strong acids (pH <= 2).
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Base

    Indicates if pure samples of this molecule are strong acids (pH >= 12).
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Pyrophoric

    Indicates if pure samples of this molecule can ignite spontaneously upon exposure to air.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    WaterReactive

    Indicates if pure samples of this molecule react spontaneously upon exposure to water.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Fuming

    Indicates if pure samples of this molecule emit fumes spontaneously when exposed to air.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    HazardousBan

    Indicates this molecule is currently banned from usage in the ECL because the facility isn't yet equiped to handle it.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    ExpirationHazard

    Indicates if pure samples of this molecule become hazardous once they are expired and must be automatically disposed of when they pass their expiration date.
    Format: Single
    Class: Boolean
    Programmatic Pattern: BooleanP

    ParticularlyHazardous Substance

    Indicates if special precautions should be taken in handling this molecule, as indicated by the MSDS classification.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    DrainDisposal

    Indicates if this molecule may be safely disposed down a standard drain.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Pungent

    Indicates if pure samples of this molecule have a strong odor.
    Format: Single
    Class: Boolean
    Programmatic Pattern: BooleanP

    MSDSRequired

    Indicates if an MSDS is required for this molecule.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    MSDSFile

    The PDF of the MSDS (Materials Saftey Data Sheet) of this molecule.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[EmeraldCloudFile]

    NFPA

    The National Fire Protection Association (NFPA) 704 hazard diamond classification for this molecule.
    Format: Single
    Class: Expression
    Programmatic Pattern: NFPAP

    DOTHazardClass

    The Department of Transportation hazard classification for this molecule.
    Format: Single
    Class: String
    Programmatic Pattern: DOTHazardClassP

    BiosafetyLevel

    The Biosafety classification for this molecule.
    Format: Single
    Class: Expression
    Programmatic Pattern: BiosafetyLevelP

Storage Information

    LightSensitive

    Indicates if this molecule reacts or degrades in the presence of light.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

Compatibility

    IncompatibleMaterials

    A list of materials that would be damaged if wetted by this molecule.
    Format: Multiple
    Class: Expression
    Programmatic Pattern: MaterialP | None

    LiquidHandlerIncompatible

    Indicates if pure samples of this molecule cannot be reliably aspirated or dispensed on an automated liquid handling robot.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    PipettingMethod

    The pipetting parameters used to manipulate pure samples of this model.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Relation: Model[Method, Pipetting]

    UltrasonicIncompatible

    Indicates if pure samples of this molecule cannot be performed via the ultrasonic distance method due to vapors interfering with the reading.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

Analysis & Reports

Experimental Results

    ReferenceImages

    Images of this virus, either obtained from an electron micrograph or a diagram.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Data] | Object[EmeraldCloudFile]
Last modified on Mon 26 Sep 2022 15:43:56
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