Object[UnitOperation, MassSpectrometryScan]
A detailed set of parameters that specifies a single mass spectrometry scan inside a LCMS protocol.
Organizational Information
Name
Name of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: A string.
ID
ID of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: The ID of this object.
Object
Object of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Object[UnitOperation, MassSpectrometryScan, _String]
Pattern Description: The object reference of this object.
Type
Type of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Object[UnitOperation, MassSpectrometryScan]
Pattern Description: Object[UnitOperation, MassSpectrometryScan]
Notebook
Notebook this object belongs to.
Format: Single
Class: Link
Programmatic Pattern: _Link
Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
Relation: Object[LaboratoryNotebook][Objects]
General
Protocol
The sample or cell preparation protocol that will direct the execution of this unit operation in the laboratory, along with other unit operations specified in the preparation protocol.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Protocol, ManualSamplePreparation][InputUnitOperations] | Object[Protocol, ManualSamplePreparation][OptimizedUnitOperations] | Object[Protocol, ManualSamplePreparation][CalculatedUnitOperations] | Object[Protocol, ManualSamplePreparation][OutputUnitOperations] | Object[Protocol, RoboticSamplePreparation][InputUnitOperations] | Object[Protocol, RoboticSamplePreparation][OptimizedUnitOperations] | Object[Protocol, RoboticSamplePreparation][CalculatedUnitOperations] | Object[Protocol, RoboticSamplePreparation][OutputUnitOperations] | Object[Protocol, ManualCellPreparation][InputUnitOperations] | Object[Protocol, ManualCellPreparation][OptimizedUnitOperations] | Object[Protocol, ManualCellPreparation][CalculatedUnitOperations] | Object[Protocol, ManualCellPreparation][OutputUnitOperations] | Object[Protocol, RoboticCellPreparation][InputUnitOperations] | Object[Protocol, RoboticCellPreparation][OptimizedUnitOperations] | Object[Protocol, RoboticCellPreparation][CalculatedUnitOperations] | Object[Protocol, RoboticCellPreparation][OutputUnitOperations] | Object[Protocol][BatchedUnitOperations]
Preparation
Indicates if this unit operation is carried out primarily robotically or manually. Manual unit operations are executed by a laboratory operator and robotic unit operations are executed by a liquid handling work cell.
Format: Single
Class: Expression
Programmatic Pattern: PreparationMethodP
WorkCell
Indicates the work cell that this primitive will be run on if Preparation->Robotic.
Format: Single
Class: Expression
Programmatic Pattern: WorkCellP
UnitOperationType
The type of this unit operation. Input Unit Operations contain the direct options specified by the user when calling ExperimentSample/CellPreparation. Optimized Unit Operations are functionally equivalent to the Input Unit Operations, but are rearranged and combined for optimized execution in the laboratory. Calculated Unit Operations are based off of the Optimized Unit Operations and contain the fully calculated set of options for laboratory execution. Output Unit Operations are based on the Calculated Unit Operations and contain additional experimental results (data objects etc). Batched Unit Operations contain the information necessary to process a single batch in a standalone manual protocol (ex. a Transfer protocol).
Format: Single
Class: Expression
Programmatic Pattern: UnitOperationTypeP
DateStarted
The date at which this unit operation started to be executed in the lab..
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
DateCompleted
The date at which this unit operation's execution was finished.
Format: Single
Class: Date
Programmatic Pattern: _?DateObjectQ
LabeledObjects
Relates a LabelSample/LabelContainer's label to the sample or container which fulfilled the label during execution.
Format: Multiple
[[1]] Label
Header: Label
Class: String
Programmatic Pattern: _String
[[2]] Object
Header: Object
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample] | Object[Sample] | Model[Container] | Object[Container] | Model[Item] | Object[Item] | Model[Part] | Object[Part] | Model[Plumbing] | Object[Plumbing]
AliquotAmountVariableUnit
The amount of a sample that should be transferred from the input samples into aliquots.
Format: Multiple
Class: VariableUnit
Programmatic Pattern: GreaterEqualP[0 Milliliter] | GreaterEqualP[0 Milligram]
AliquotAmountInteger
The amount of a sample that should be transferred from the input samples into aliquots.
Format: Multiple
Class: Integer
Programmatic Pattern: GreaterP[0, 1]
AliquotAmountExpression
The amount of a sample that should be transferred from the input samples into aliquots.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[All | Null | GreaterEqualP[0 Milliliter] | GreaterEqualP[0 Milligram] | GreaterP[0, 1]]
NumberOfReplicates
Number of times each of the input samples should be analyzed using identical experimental parameters.
Format: Single
Class: Integer
Programmatic Pattern: GreaterEqualP[0, 1]
RoboticUnitOperations
The list of all robotic unit operations that indicate what will actually happen on the liquid handling deck when this unit operation is performed robotically.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[UnitOperation]
Sample
The sample that is to be centrifuged during this unit operation.
Format: Single
Class: Link
Programmatic Pattern: _Link
SampleType
The type of sample for this unit operation.
Format: Single
Class: Expression
Programmatic Pattern: Standard | Sample | ColumnPrime | ColumnFlush | Blank
Experimental Results
EnvironmentalData
Measurements of environmental conditions (temperature and humidity) recorded during the execution of this unit operation.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
Data
Any primary data generated by this unit operation.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
Preparatory Incubation
Incubate
Indicates if the SamplesIn should be incubated at a fixed temperature prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
Thaw
Indicates if any frozen SamplesIn should be incubated until visibly liquid prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
IncubationTemperatureReal
Temperature at which the SamplesIn should be incubated for the duration of the IncubationTime prior to starting the experiment.
Format: Multiple
Class: Real
Programmatic Pattern: GreaterEqualP[0 Kelvin]
IncubationTemperature Expression
Temperature at which the SamplesIn should be incubated for the duration of the IncubationTime prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[Ambient | Null | GreaterEqualP[0 Kelvin]]
IncubationTime
Duration for which SamplesIn should be incubated at the IncubationTemperature prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Second] | Null]
AnnealingTime
Minimum duration for which the SamplesIn should remain in the incubator allowing the system to settle to room temperature after the IncubationTime has passed but prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Second] | Null]
Mix
Indicates if this sample should be mixed while incubated, prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
MixType
Indicates the style of motion used to mix the sample, prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[MixTypeP | Null]
MixUntilDissolved
Indicates if the mix should be continued up to the MaxIncubationTime or MaxNumberOfMixes (chosen according to the mix Type), in an attempt dissolve any solute. Any mixing/incubation will occur prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
MaxIncubationTime
Maximum duration of time for which the samples will be mixed while incubated in an attempt to dissolve any solute, if the MixUntilDissolved option is chosen. This occurs prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Second] | Null]
IncubationInstrument
The instrument used to perform the Mix and/or Incubation, prior to starting the experiment.
Format: Multiple
Class: Expression
IncubateAliquotContainer
The desired type of container that should be used to prepare and house the incubation samples which should be used in lieu of the SamplesIn for the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[{_Integer | Null, ObjectP[Model[Container]] | Null} | Null]
IncubateAliquotDestination Well
The desired position in the corresponding IncubateAliquotContainer in which the aliquot samples will be placed.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null]
IncubateAliquotReal
The amount of each sample that should be transferred from the SamplesIn into the IncubateAliquotContainer when performing an aliquot before incubation.
Format: Multiple
Class: Real
Unit: 1 liter
Programmatic Pattern: GreaterEqualP[0 Liter]
IncubateAliquotExpression
The amount of each sample that should be transferred from the SamplesIn into the IncubateAliquotContainer when performing an aliquot before incubation.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[All | Null | GreaterEqualP[0 Liter]]
Preparatory Centrifugation
Centrifuge
Indicates if the SamplesIn should be centrifuged prior to starting the experiment or any aliquoting. Sample Preparation occurs in the order of Incubation, Centrifugation, Filtration, and then Aliquoting (if specified).
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
CentrifugeInstrument
The centrifuge that will be used to spin the provided samples prior to starting the experiment.
Format: Multiple
Class: Expression
CentrifugeIntensity
The rotational speed or the force that will be applied to the samples by centrifugation prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterP[0 RPM] | GreaterP[0 GravitationalAcceleration] | Null]
CentrifugeTime
The amount of time for which the SamplesIn should be centrifuged prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Second] | Null]
CentrifugeTemperatureReal
The temperature at which the centrifuge chamber should be held while the samples are being centrifuged prior to starting the experiment.
Format: Multiple
Class: Real
Programmatic Pattern: GreaterEqualP[0 Kelvin]
CentrifugeTemperature Expression
The temperature at which the centrifuge chamber should be held while the samples are being centrifuged prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[Ambient | Null | GreaterEqualP[0 Kelvin]]
CentrifugeAliquotContainer Link
The desired type of container that should be used to prepare and house the centrifuge samples which should be used in lieu of the SamplesIn for the experiment.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
CentrifugeAliquotContainer Expression
The desired type of container that should be used to prepare and house the centrifuge samples which should be used in lieu of the SamplesIn for the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[{_Integer | _String, ObjectP[{Model[Container], Object[Container]}]} | Null | ObjectP[{Model[Container], Object[Container]}]]
CentrifugeAliquotDestination Well
The desired position in the corresponding AliquotContainer in which the aliquot samples will be placed.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null]
CentrifugeAliquotReal
The amount of a sample that should be transferred from the input samples into aliquots.
Format: Multiple
Class: Real
Programmatic Pattern: GreaterEqualP[0 Milliliter]
CentrifugeAliquotExpression
The amount of a sample that should be transferred from the input samples into aliquots.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[All | Null | GreaterEqualP[0 Milliliter]]
Preparatory Filtering
Filtration
Indicates if the SamplesIn should be filter prior to starting the experiment or any aliquoting. Sample Preparation occurs in the order of Incubation, Centrifugation, Filtration, and then Aliquoting (if specified).
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
FiltrationType
The type of filtration method that should be used to perform the filtration.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[FiltrationTypeP | Null]
FilterInstrument
The instrument that should be used to perform the filtration.
Format: Multiple
Class: Expression
FilterLink
The filter that should be used to remove impurities from the samples.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
FilterString
The filter that should be used to remove impurities from the samples.
Format: Multiple
Class: String
Programmatic Pattern: _String
FilterExpression
The filter that should be used to remove impurities from the samples.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null | ObjectP[{Model[Container, Plate, Filter], Object[Container, Plate, Filter], Model[Container, Vessel, Filter], Object[Container, Vessel, Filter], Model[Item, Filter], Object[Item, Filter]}]]
FilterMaterial
The membrane material of the filter that should be used to remove impurities from the SamplesIn prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[FilterMembraneMaterialP | Null]
PrefilterMaterial
The material from which the prefilter filtration membrane should be made of to remove impurities from the SamplesIn prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[FilterMembraneMaterialP | Null]
FilterPoreSize
The pore size of the filter that should be used when removing impurities from the SamplesIn prior to starting the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[FilterSizeP | Null]
PrefilterPoreSize
The pore size of the filter; all particles larger than this should be removed during the filtration.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[FilterSizeP | Null]
FilterSyringe
The syringe used to force that sample through a filter.
Format: Multiple
Class: Expression
FilterHousingLink
The filter housing that should be used to hold the filter membrane when filtration is performed using a standalone filter membrane.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
FilterHousingExpression
The filter housing that should be used to hold the filter membrane when filtration is performed using a standalone filter membrane.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[ObjectP[{Model[Instrument], Object[Instrument], Model[Instrument, FilterBlock], Object[Instrument, FilterBlock]}] | Null]
FilterIntensity
The rotational speed or force at which the samples will be centrifuged during filtration.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterP[0 RPM] | GreaterP[0 GravitationalAcceleration] | Null]
FilterTime
The amount of time for which the samples will be centrifuged during filtration.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Minute] | Null]
FilterTemperature
The temperature at which the centrifuge chamber will be held while the samples are being centrifuged during filtration.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Celsius] | Null]
FilterContainerOutLink
The desired container filtered samples should be produced in or transferred into by the end of filtration, with indices indicating grouping of samples in the same plates, if desired.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
FilterContainerOutString
The desired container filtered samples should be produced in or transferred into by the end of filtration, with indices indicating grouping of samples in the same plates, if desired.
Format: Multiple
Class: String
Programmatic Pattern: _String
FilterContainerOutExpression
The desired container filtered samples should be produced in or transferred into by the end of filtration, with indices indicating grouping of samples in the same plates, if desired.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[{_Integer | _String, ObjectP[{Model[Container], Object[Container]}]} | Null | ObjectP[{Model[Container], Object[Container]}]]
FilterAliquotDestinationWell
The desired position in the corresponding AliquotContainer in which the aliquot samples will be placed.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null]
FilterAliquotContainerLink
The desired type of container that should be used to prepare and house the filter samples which should be used in lieu of the SamplesIn for the experiment.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
FilterAliquotContainerString
The desired type of container that should be used to prepare and house the filter samples which should be used in lieu of the SamplesIn for the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null]
FilterAliquotContainer Expression
The desired type of container that should be used to prepare and house the filter samples which should be used in lieu of the SamplesIn for the experiment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[{_Integer | _String, ObjectP[{Model[Container], Object[Container]}]} | Null | ObjectP[{Model[Container], Object[Container]}]]
FilterAliquotReal
The amount of each sample that should be transferred from the SamplesIn into the FilterAliquotContainer when performing an aliquot before filtration.
Format: Multiple
Class: Real
Unit: 1 millimeter
Programmatic Pattern: GreaterP[0 Milli Meter]
FilterAliquotExpression
The amount of each sample that should be transferred from the SamplesIn into the FilterAliquotContainer when performing an aliquot before filtration.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[All | Null | GreaterP[0 Milli Meter]]
FilterSterile
Indicates if the filtration of the samples should be done in a sterile environment.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[BooleanP | Null]
Aliquoting
TargetConcentration
The desired final concentration of analyte in the aliquot samples after dilution of aliquots of the input samples with the ConcentratedBuffer and BufferDiluent (or AssayBuffer).
Format: Multiple
Class: Expression
Programmatic Pattern: Gram Gram
Hold[GreaterEqualP[0 Micromolar] | GreaterEqualP[0 -----] | {(GreaterP[0 Molar] | GreaterP[0 -----] | Null)..}]
Liter Liter
TargetConcentrationAnalyte
For each member of TargetConcentration, the substance whose final concentration is attained with TargetConcentration.
Format: Multiple
Class: Expression
Programmatic Pattern: ObjectP[IdentityModelTypes] | {(ObjectP[IdentityModelTypes] | Null)..}
ConcentratedBufferLink
The concentrated buffer source which is added to each of the AliquotSamples to obtain 1x buffer concentration after dilution of the AliquotSamples which are used in lieu of the SamplesIn for the manual unit operation.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
ConcentratedBufferString
The concentrated buffer which should be diluted by the BufferDilutionFactor in the final solution (i.e., the combination of the sample, ConcentratedBuffer, and BufferDiluent).
Format: Multiple
Class: String
Programmatic Pattern: _String
ConcentratedBufferExpression
The concentrated buffer which should be diluted by the BufferDilutionFactor in the final solution (i.e., the combination of the sample, ConcentratedBuffer, and BufferDiluent).
Format: Multiple
Class: Expression
BufferDilutionFactor
The dilution factor by which the concentrated buffer is diluted in preparing the AliquotSamples to obtain a 1x buffer concentration after dilution of the AliquotSamples which are used in lieu of the SamplesIn for the manual unit operation.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterP[0] | Null]
BufferDiluentLink
The diluent used to dilute the concentration of the concentrated buffer in preparing the AliquotSamples which are used in lieu of the SamplesIn for the manual unit operation.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
BufferDiluentString
The buffer used to dilute the aliquot sample such that ConcentratedBuffer is diluted by BufferDilutionFactor in the final solution.
Format: Multiple
Class: String
Programmatic Pattern: _String
BufferDiluentExpression
The buffer used to dilute the aliquot sample such that ConcentratedBuffer is diluted by BufferDilutionFactor in the final solution.
Format: Multiple
Class: Expression
AssayBufferLink
The desired buffer for the AliquotSamples which are used in lieu of the SamplesIn for the manual unit operation.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
AssayBufferString
The buffer sample used to dilute the final sample in ContainerOut.
Format: Multiple
Class: String
Programmatic Pattern: _String
AssayBufferExpression
The buffer sample used to dilute the final sample in ContainerOut.
Format: Multiple
Class: Expression
DestinationWell
For each member of DestinationLink, the desired position in the corresponding destination in which the transferred samples will be placed.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null]
AliquotContainerLink
The desired type of container that should be used to prepare and house the aliquot samples, with indices indicating grouping of samples in the same plates, if desired. This option will resolve to be the length of the SamplesIn * NumberOfReplicates.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
AliquotContainerString
The desired type of container that should be used to prepare and house the aliquot samples, with indices indicating grouping of samples in the same plates, if desired. This option will resolve to be the length of the SamplesIn * NumberOfReplicates.
Format: Multiple
Class: String
Programmatic Pattern: _String
AliquotContainerExpression
The desired type of container that should be used to prepare and house the aliquot samples, with indices indicating grouping of samples in the same plates, if desired. This option will resolve to be the length of the SamplesIn * NumberOfReplicates.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[{_Integer | _String, ObjectP[{Model[Container], Object[Container]}]} | _String | Null | ObjectP[{Model[Container], Object[Container]}]]
AliquotPreparation
Indicates if the aliquotting should occur manually or on a robotic liquid handler.
Format: Single
Class: Expression
Programmatic Pattern: ListableP[PreparationMethodP | Null]
ConsolidateAliquots
Indicates if identical aliquots should be consolidated in a single sample.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
AssayVolume
The desired total volume of the aliquoted sample plus dilution buffer.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[GreaterEqualP[0 Milliliter] | Null]
AliquotSampleLabel
The label of the samples, after they are aliquotted.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[_String | Null]
Sample Post-Processing
AliquotSampleStorageCondition
Indicates the conditions under which the aliquoted samples are stored after the unit operation is completed.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[SampleStorageTypeP | Disposal | Null]
SamplesInStorageCondition
Indicates the conditions under which the source samples are stored after the unit operation is completed.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[SampleStorageTypeP | Disposal | Null]
MeasureWeight
Indicates if the weight of the solid samples modified in the course of the experiment are measured after running the experiment.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
MeasureVolume
Indicates if the volume of the liquid samples modified in the course of the experiment are measured after running the experiment.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
ImageSample
Indicates if the samples that are modified in the course of the experiment are imaged after running the experiment.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
SamplesOutStorageCondition
The non-default conditions under which any new samples generated by this experiment should be stored after the protocol is completed. If left unset, the new samples will be stored according to their Models' DefaultStorageCondition.
Format: Multiple
Class: Expression
Programmatic Pattern: ListableP[SampleStorageTypeP | Disposal | Null]
Mass Analysis
AcquisitionWindow
The time blocks to acquire measurement.
Format: Single
[StartTime]
Header: StartTime
Class: Real
Unit: 1 minute
[EndTime]
Header: EndTime
Class: Real
Unit: 1 minute
AcquisitionMode
The manner of scanning and/or fragmenting intact and resultant ions.
Format: Single
Class: Expression
Programmatic Pattern: MSAcquisitionModeP
Fragmentation
Indicates whether the intact ions collide with inert gas to dissociate into product ions. Also known as Tandem mass spectrometry or MS/MS.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
MinMass
The lowest measured or selected mass-to-charge ratio (m/z) intact ions.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterEqualP[------]]
Mole
MaxMass
The highest measured or selected mass-to-charge ratio (m/z) intact ions.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
MassSelections
All of the measured or selected mass-to-charge ratio (m/z) intact ions.
Format: Multiple
Class: Expression
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
ScanTime
The duration of time allowed to pass between each spectral acquisition.
Format: Single
Class: Real
Unit: 1 second
Programmatic Pattern: GreaterP[0 Second]
FragmentMinMass
The lowest measured or selected mass-to-charge ratio (m/z) dissociation product ions.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterEqualP[------]]
Mole
FragmentMaxMass
The highest measured or selected mass-to-charge ratio (m/z) dissociation product ions.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
FragmentMassSelections
All of the measured or selected mass-to-charge ratio (m/z) dissociation product ions.
Format: Multiple
Class: Expression
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
CollisionEnergies
The applied potential that accelerates ions into an inert gas for induced dissociation.
Format: Multiple
Class: Expression
Programmatic Pattern: UnitsP[0 Volt]
LowCollisionEnergy
The lowest value of the linear function for applied potential as mapped to the MinMass.
Format: Single
Class: Real
Unit: 1 volt
Programmatic Pattern: GreaterP[0 Volt]
HighCollisionEnergy
The highest value of the linear function for applied potential as mapped to the MinMass.
Format: Single
Class: Real
Unit: 1 volt
Programmatic Pattern: GreaterP[0 Volt]
FinalLowCollisionEnergy
At the end of the spectral scan, the lowest value of the linear function for applied potential as mapped to the MinMass.
Format: Single
Class: Real
Unit: 1 volt
Programmatic Pattern: GreaterP[0 Volt]
FinalHighCollisionEnergy
At the end of the spectral scan, the highest value of the linear function for applied potential as mapped to the MinMass.
Format: Single
Class: Real
Unit: 1 volt
Programmatic Pattern: GreaterP[0 Volt]
FragmentScanTime
The duration of time allowed to pass between each spectral acquisition for the product ions when AcquistionMode -> DataDependent.
Format: Single
Class: Real
Unit: 1 second
Programmatic Pattern: GreaterP[0 Second]
AcquisitionSurvey
Indicates the number of intact ions to consider for fragmentation and acquisition in DataDependent acquistion mode.
Format: Single
Class: Integer
Programmatic Pattern: GreaterP[0, 1]
MinimumThreshold
The least number of total intact ions needed to be measured to elicit an acquisition program.
Format: Single
Class: Integer
Programmatic Pattern: GreaterP[0, 1]
AcquisitionLimit
The maximum number measured ions allowed during a fragmentation measurement of a survey ion. Will proceed to the next intact ion/fragmentation once reached.
Format: Single
Class: Integer
Programmatic Pattern: GreaterP[0, 1]
CycleTimeLimit
The maximum duration allowable for a survey. Will proceed to the next cycle once reached.
Format: Single
Class: Real
Unit: 1 second
Programmatic Pattern: GreaterP[0 Second]
ExclusionDomain
The time blocks within to consider for specific mass exclusion.
Format: Multiple
Class: Expression
Programmatic Pattern: {UnitsP[Minute], UnitsP[Minute]}
ExclusionMass
Indicates the manner of omitting intact ions for acquisition survey.
Format: Multiple
Class: Expression
Programmatic Pattern: 0 Gram
Hold[{ExclusionModeP, GreaterP[------]}]
Mole
ExclusionMassTolerance
The range above and below each ion in ExclusionMassSelection to consider for omission.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: GreaterP[0 Dalton]
ExclusionRetentionTime Tolerance
The range above and below each retention time in ExclusionMassSelection to consider for omission.
Format: Single
Class: Real
Unit: 1 second
Programmatic Pattern: GreaterP[0 Second]
InclusionDomain
The time blocks within to consider for specific mass inclusion.
Format: Multiple
Class: Expression
Programmatic Pattern: {UnitsP[Minute], UnitsP[Minute]}
InclusionMass
The intact ions to prioritize during survey acquisition.
Format: Multiple
Class: Expression
Programmatic Pattern: 0 Gram
Hold[{InclusionModeP, GreaterP[------]}]
Mole
InclusionCollisionEnergies
The overriding collision energy to use for the corresponding InclusionMass.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterEqualP[0 Volt]
InclusionDeclusteringVoltages
The overriding source voltage to use for the corresponding InclusionMass.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterEqualP[0 Volt]
InclusionChargeStates
The charge state isotopes to also consider for inclusion.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterEqualP[0, 1]
InclusionScanTimes
The overriding scan time to use for the corresponding InclusionMass.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterEqualP[0 Second]
InclusionMassTolerance
The range above and below each ion in InclusionMassSelection to consider for omission.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: GreaterP[0 Dalton]
ChargeStateLimit
The number of ions to survey before excluding for ion state properties.
Format: Single
Class: Integer
Programmatic Pattern: GreaterEqualP[0, 1]
ChargeStateSelections
The specific ionic states of intact ions to redundantly exclude from the survey for further fragmentation/acquisition.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterEqualP[1, 1]
ChargeStateMassTolerance
The range of m/z to consider for exclusion by ionic state property.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: GreaterP[0 Dalton]
IsotopeMassDifferences
The delta between monoisotopic ions as a criterion for survey exclusion.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterP[0 Dalton]
IsotopeRatios
The minimum relative magnitude between monoisotopic ions as a criterion for survey exclusion.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterP[0]
IsotopeDetectionMinimums
The acquisition rate of a given intact mass to consider for isotope exclusion in the survey.
Format: Multiple
Class: Expression
Programmatic Pattern: 1
Hold[GreaterP[0 ------]]
Second
IsotopeRatioTolerance
The range of relative magnitude around IsotopeRatio and SecondaryIsotopeRatio to consider for isotope exclusion.
Format: Single
Class: Real
Unit: 1 percent
Programmatic Pattern: GreaterP[0 Percent]
IsotopeMassTolerance
The range of m/z to consider for exclusion by ionic state property.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: GreaterP[0 Dalton]
CollisionCellExitVoltage
If the sample will be scanned in tandem mass spectrometry mode in ESI-QQQ, the value of the potential applied between collision cell and the second Quadrupole mass analyzer (MS2) to guide and focus the ion beam into MS2.
Format: Single
Class: Real
Unit: 1 volt
Programmatic Pattern: UnitsP[0 Volt]
MassDetectionStepSize
The mass-to-charge value at which the mass spectrometer will record a data of the mass scan.
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
NeutralLoss
In ESI-QQQ analysis, if the sample will be scanned in tandem mass spectrometry mode with Neutral Ion Loss mode, the value for the mass offset values between MS1 and MS2 (neutral ion loss value.).
Format: Single
Class: Real
Unit: 1 gram per mole
Programmatic Pattern: 0 Gram
Hold[GreaterP[------]]
Mole
DwellTime
If the sample will be scan in SelectedIonMonitoring mode or SingleReactionMonitoring mode, the length of time for each mass selection or mass selection pairs.
Format: Multiple
Class: Expression
Programmatic Pattern: GreaterP[0 Millisecond]
MultipleReactionMonitoring Assays
In ESI-QQQ analysis, that firstly targets the ion corresponding to the compound of interest with subsequent fragmentation of that target ion to produce a range of daughter ions. One (or more) of these fragment daughter ions can be selected for quantitation purposes. Only compounds that meet both these criteria, i.e. specific parent ion and specific daughter ions corresponding to the mass of the molecule of interest are detected within the mass spectrometer. The mass assays (MS1/MS2 mass value combinations) for each scan, along with the CollisionEnergy and dwell time (length of time of each scan).
Format: Multiple
[MS1Mass]
Header: MS1Mass
Class: Expression
[CollisionEnergy]
Header: CollisionEnergy
Class: Expression
[MS2Mass]
Header: MS2Mass
Class: Expression
[DwellTime]
Header: DwellTime
Class: Expression
Last modified on Mon 26 Sep 2022 15:43:53