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Model[Cell, Mammalian]

Model information for a cell line that is derived from a mammalian organism.

Organizational Information

    Name

    Name of this Object.
    Format: Single
    Class: String
    Programmatic Pattern: _String
    Pattern Description: A string.

    ID

    ID of this Object.
    Format: Single
    Class: String
    Programmatic Pattern: _String
    Pattern Description: The ID of this object.

    Object

    Object of this Object.
    Format: Single
    Class: Expression
    Programmatic Pattern: Model[Cell, Mammalian, _String]
    Pattern Description: The object reference of this object.

    Type

    Type of this Object.
    Format: Single
    Class: Expression
    Programmatic Pattern: Model[Cell, Mammalian]
    Pattern Description: Model[Cell, Mammalian]

    Notebook

    Notebook this object belongs to.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].

    Synonyms

    List of possible alternative names this model goes by.
    Format: Multiple
    Class: String
    Programmatic Pattern: _String

    Authors

    The people who created this model.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[User]

    ATCCID

    The American Type Culture Collection (ATCC) identifying number of this cell line.
    Format: Single
    Class: String
    Programmatic Pattern: _String

    Species

    The species that this cell was originally cultivated from.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    Viruses

    Viruses that are known to be carried by this cell line.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Model[Virus]

    cDNAs

    The cDNA models that this cell line produces.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link

    Transcripts

    The transcript models that this cell line produces.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link

    Lysates

    The model of the contents of this cell when lysed.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link

    Tissues

    The types of tissue that this cell helps comprise.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link

Inventory

    DefaultSampleModel

    Specifies the model of sample that will be used if this model is specified to be used in an experiment.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Relation: Model[Sample]

Physical Properties

    Diameter

    The average diameter of an individual cell.
    Format: Single
    Class: Real
    Unit: 1 micrometer
    Programmatic Pattern: GreaterP[0 Micro Meter]

    DoublingTime

    The average period of time it takes for a population of these cells to double in number during their exponential growth phase in its preferred media.
    Format: Single
    Class: Real
    Unit: 1 hour
    Programmatic Pattern: GreaterP[0 Hour]

    DetectionLabels

    Indicate the tags (e.g. GFP, Alexa Fluor 488) that the cell contains, which can indicate the presence and amount of particular features or molecules in the cell.
    Format: Multiple
    Class: Link
    Programmatic Pattern: ObjectP[Model[Molecule]]
    Relation: Model[Molecule]

    CellType

    The primary types of cells that are contained within this sample.
    Format: Single
    Class: Expression
    Programmatic Pattern: CellTypeP

    pH

    The logarithmic concentration of hydrogen ions of a pure sample of this molecule at room temperature and pressure.
    Format: Single
    Class: Real
    Programmatic Pattern: RangeP[0, 14]

    Morphology

    The morphological type of the cell line.
    Format: Single
    Class: Expression
    Programmatic Pattern: MammalianCellMorphologyP

General

    IncubationTemperature

    The nominal incubation temperature at which this cell line grows.
    Format: Single
    Class: Real
    Unit: 1 degree Celsius
    Programmatic Pattern: TemperatureP

    PreferredLiquidMedia

    The recommended liquid media for the growth of the cells.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    PreferredSolidMedia

    The recommended solid media for the growth of the cells.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    PreferredFreezingMedia

    The recommended media for cryopreservation of these cells, often containing additives that protect the cells during freezing.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    CultureAdhesion

    The default type of cell culture (adherent or suspension) that should be performed when growing these cells. If a cell line can be cultured via an adherent or suspension culture, this is set to the most common cell culture type for the cell line.
    Format: Single
    Class: Expression
    Programmatic Pattern: CultureAdhesionP

    ThawCellsMethod

    The default method by which to thaw cryovials of this cell line.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    WashCellsMethod

    The default method by which to wash cultures of this cell line.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    ChangeMediaMethod

    The default method by which to change the media for cultures of this cell line.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    SplitCellsMethod

    The default method by which to split this cell line.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

Health & Safety

    Radioactive

    Indicates if this molecule emits substantial ionizing radiation.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Ventilated

    Indicates if a pure sample of this molecule must be handled in a ventilated enclosures.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Flammable

    Indicates if a pure sample of this molecule is easily set aflame at room temperature and pressure.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Acid

    Indicates if pure samples of this molecule are strong acids (pH <= 2).
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Base

    Indicates if pure samples of this molecule are strong acids (pH >= 12).
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Pyrophoric

    Indicates if pure samples of this molecule can ignite spontaneously upon exposure to air.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    WaterReactive

    Indicates if pure samples of this molecule react spontaneously upon exposure to water.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Fuming

    Indicates if pure samples of this molecule emit fumes spontaneously when exposed to air.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    HazardousBan

    Indicates this molecule is currently banned from usage in the ECL because the facility isn't yet equiped to handle it.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    ExpirationHazard

    Indicates if pure samples of this molecule become hazardous once they are expired and must be automatically disposed of when they pass their expiration date.
    Format: Single
    Class: Boolean
    Programmatic Pattern: BooleanP

    ParticularlyHazardous Substance

    Indicates if special precautions should be taken in handling this molecule, as indicated by the MSDS classification.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    DrainDisposal

    Indicates if this molecule may be safely disposed down a standard drain.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    Pungent

    Indicates if pure samples of this molecule have a strong odor.
    Format: Single
    Class: Boolean
    Programmatic Pattern: BooleanP

    MSDSRequired

    Indicates if an MSDS is required for this molecule.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    MSDSFile

    The PDF of the MSDS (Materials Saftey Data Sheet) of this molecule.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    NFPA

    The National Fire Protection Association (NFPA) 704 hazard diamond classification for this molecule.
    Format: Single
    Class: Expression
    Programmatic Pattern: NFPAP

    DOTHazardClass

    The Department of Transportation hazard classification for this molecule.
    Format: Single
    Class: String
    Programmatic Pattern: DOTHazardClassP

    BiosafetyLevel

    The Biosafety classification for this molecule.
    Format: Single
    Class: Expression
    Programmatic Pattern: BiosafetyLevelP

Storage Information

    LightSensitive

    Indicates if this molecule reacts or degrades in the presence of light.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

Compatibility

    IncompatibleMaterials

    A list of materials that would be damaged if wetted by this molecule.
    Format: Multiple
    Class: Expression
    Programmatic Pattern: MaterialP | None

    LiquidHandlerIncompatible

    Indicates if pure samples of this molecule cannot be reliably aspirated or dispensed on an automated liquid handling robot.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

    PipettingMethod

    The pipetting parameters used to manipulate pure samples of this model.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link

    UltrasonicIncompatible

    Indicates if pure samples of this molecule cannot be performed via the ultrasonic distance method due to vapors interfering with the reading.
    Format: Single
    Class: Expression
    Programmatic Pattern: BooleanP

Experimental Results

    ReferenceImages

    Reference microscope images exemplifying the typical appearance of this cell line.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Data]

Analysis & Reports

    GrowthCurves

    The standard curve used to convert turbidity measurements to cell counts. The cell count conversion factor is the slope of the standard curve, which is used to convert turbidity measurements to cell count.
    Format: Multiple

    [[1]] Standard Curve

    [[2]] Cell Count Conversion Factor

      Header: Cell Count Conversion Factor
      Class: Real
      Unit: 1 milliliter
      Programmatic Pattern: _Real

    GrowthCurveAcquisition

    A description of the acquisition parameters used to collect the data to create the GrowthCurve. The method indicates whether the data was collected by absorbance or nephelometry. The instrument model indicates the model of the instrument used to collect the standard curve data. If the method used was Nephelometry, the beam aperture indicates the diameter of the opening allowing the source light to pass through to the sample when the data was collected. If the method used was Nephelometry, the beam intensity indicates the percentage of the total amount of the source light passed through to hit the sample when the data was collected. If the method used was Nephelometry, integration time indicates the amount of time that light was measured to determine turbidity when the data was collected. If the method used was Absorbance, the wavelength indicates the wavelength of light at which the measurements were taken.
    Format: Multiple

    [[1]] Method

      Header: Method
      Class: Expression
      Programmatic Pattern: Absorbance|Nephelometry

    [[2]] Instrument Model

      Header: Instrument Model
      Class: Link
      Programmatic Pattern: _Link

    [[3]] Beam Aperture

      Header: Beam Aperture
      Class: Real
      Unit: 1 millimeter
      Programmatic Pattern: _Real

    [[4]] Beam Intensity

      Header: Beam Intensity
      Class: Real
      Unit: 1 percent
      Programmatic Pattern: PercentP

    [[5]] Integration Time

      Header: Integration Time
      Class: Real
      Unit: 1 second
      Programmatic Pattern: TimeP

    [[6]] Wavelength

      Header: Wavelength
      Class: Real
      Unit: 1 nanometer
      Programmatic Pattern: DistanceP
Last modified on Mon 26 Sep 2022 15:43:53