Model[Cell, Yeast]
Model information for a specific strain of yeast.
Organizational Information
Name
Name of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: A string.
ID
ID of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: The ID of this object.
Object
Object of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Model[Cell, Yeast, _String]
Pattern Description: The object reference of this object.
Type
Type of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Model[Cell, Yeast]
Pattern Description: Model[Cell, Yeast]
Notebook
Notebook this object belongs to.
Format: Single
Class: Link
Programmatic Pattern: _Link
Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
Relation: Object[LaboratoryNotebook][Objects]
Synonyms
List of possible alternative names this model goes by.
Format: Multiple
Class: String
Programmatic Pattern: _String
Authors
The people who created this model.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[User]
ATCCID
The American Type Culture Collection (ATCC) identifying number of this cell line.
Format: Single
Class: String
Programmatic Pattern: _String
Species
The species that this cell was originally cultivated from.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Species][Cells]
Viruses
Viruses that are known to be carried by this cell line.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Virus]
cDNAs
The cDNA models that this cell line produces.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule, cDNA][Cells]
Transcripts
The transcript models that this cell line produces.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule, Transcript][Cells]
Lysates
The model of the contents of this cell when lysed.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Lysate][Cell]
Inventory
DefaultSampleModel
Specifies the model of sample that will be used if this model is specified to be used in an experiment.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample]
Physical Properties
Diameter
The average diameter of an individual cell.
Format: Single
Class: Real
Unit: 1 micrometer
Programmatic Pattern: GreaterP[0 Micro Meter]
DoublingTime
The average period of time it takes for a population of these cells to double in number during their exponential growth phase in its preferred media.
Format: Single
Class: Real
Unit: 1 hour
Programmatic Pattern: GreaterP[0 Hour]
DetectionLabels
Indicate the tags (e.g. GFP, Alexa Fluor 488) that the cell contains, which can indicate the presence and amount of particular features or molecules in the cell.
Format: Multiple
Class: Link
Programmatic Pattern: ObjectP[Model[Molecule]]
Relation: Model[Molecule]
CellType
The primary types of cells that are contained within this sample.
Format: Single
Class: Expression
Programmatic Pattern: CellTypeP
pH
The logarithmic concentration of hydrogen ions of a pure sample of this molecule at room temperature and pressure.
Format: Single
Class: Real
Programmatic Pattern: RangeP[0, 14]
General
IncubationTemperature
The nominal incubation temperature at which this cell line grows.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: TemperatureP
PreferredLiquidMedia
The recommended liquid media for the growth of the cells.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample, Media][CellTypes]
PreferredSolidMedia
The recommended solid media for the growth of the cells.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample, Media][CellTypes]
PreferredFreezingMedia
The recommended media for cryopreservation of these cells, often containing additives that protect the cells during freezing.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample, Media][CellTypes]
CultureAdhesion
The default type of cell culture (adherent or suspension) that should be performed when growing these cells. If a cell line can be cultured via an adherent or suspension culture, this is set to the most common cell culture type for the cell line.
Format: Single
Class: Expression
Programmatic Pattern: CultureAdhesionP
ThawCellsMethod
The default method by which to thaw cryovials of this cell line.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, ThawCells]
WashCellsMethod
The default method by which to wash cultures of this cell line.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, WashCells]
ChangeMediaMethod
The default method by which to change the media for cultures of this cell line.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, ChangeMedia]
SplitCellsMethod
The default method by which to split this cell line.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, SplitCells]
Health & Safety
Radioactive
Indicates if this molecule emits substantial ionizing radiation.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Ventilated
Indicates if a pure sample of this molecule must be handled in a ventilated enclosures.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Flammable
Indicates if a pure sample of this molecule is easily set aflame at room temperature and pressure.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Acid
Indicates if pure samples of this molecule are strong acids (pH <= 2).
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Base
Indicates if pure samples of this molecule are strong acids (pH >= 12).
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Pyrophoric
Indicates if pure samples of this molecule can ignite spontaneously upon exposure to air.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
WaterReactive
Indicates if pure samples of this molecule react spontaneously upon exposure to water.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Fuming
Indicates if pure samples of this molecule emit fumes spontaneously when exposed to air.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
HazardousBan
Indicates this molecule is currently banned from usage in the ECL because the facility isn't yet equiped to handle it.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
ExpirationHazard
Indicates if pure samples of this molecule become hazardous once they are expired and must be automatically disposed of when they pass their expiration date.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
ParticularlyHazardous Substance
Indicates if special precautions should be taken in handling this molecule, as indicated by the MSDS classification.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
DrainDisposal
Indicates if this molecule may be safely disposed down a standard drain.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Pungent
Indicates if pure samples of this molecule have a strong odor.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
MSDSRequired
Indicates if an MSDS is required for this molecule.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
MSDSFile
The PDF of the MSDS (Materials Saftey Data Sheet) of this molecule.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[EmeraldCloudFile]
NFPA
The National Fire Protection Association (NFPA) 704 hazard diamond classification for this molecule.
Format: Single
Class: Expression
Programmatic Pattern: NFPAP
DOTHazardClass
The Department of Transportation hazard classification for this molecule.
Format: Single
Class: String
Programmatic Pattern: DOTHazardClassP
BiosafetyLevel
The Biosafety classification for this molecule.
Format: Single
Class: Expression
Programmatic Pattern: BiosafetyLevelP
Storage Information
LightSensitive
Indicates if this molecule reacts or degrades in the presence of light.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Compatibility
IncompatibleMaterials
A list of materials that would be damaged if wetted by this molecule.
Format: Multiple
Class: Expression
Programmatic Pattern: MaterialP | None
LiquidHandlerIncompatible
Indicates if pure samples of this molecule cannot be reliably aspirated or dispensed on an automated liquid handling robot.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
PipettingMethod
The pipetting parameters used to manipulate pure samples of this model.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Method, Pipetting]
UltrasonicIncompatible
Indicates if pure samples of this molecule cannot be performed via the ultrasonic distance method due to vapors interfering with the reading.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Experimental Results
ReferenceImages
Reference microscope images exemplifying the typical appearance of this cell line.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
Analysis & Reports
GrowthCurves
The standard curve used to convert turbidity measurements to cell counts.
The cell count conversion factor is the slope of the standard curve, which is used to convert turbidity measurements to cell count.
Format: Multiple
[[1]] Standard Curve
Header: Standard Curve
Class: Link
Programmatic Pattern: _Link
Relation: Object[Analysis, StandardCurve]
[[2]] Cell Count Conversion Factor
Header: Cell Count Conversion Factor
Class: Real
Unit: 1 milliliter
Programmatic Pattern: _Real
GrowthCurveAcquisition
A description of the acquisition parameters used to collect the data to create the GrowthCurve.
The method indicates whether the data was collected by absorbance or nephelometry.
The instrument model indicates the model of the instrument used to collect the standard curve data.
If the method used was Nephelometry, the beam aperture indicates the diameter of the opening allowing the source light to pass through to the sample when the data was collected.
If the method used was Nephelometry, the beam intensity indicates the percentage of the total amount of the source light passed through to hit the sample when the data was collected.
If the method used was Nephelometry, integration time indicates the amount of time that light was measured to determine turbidity when the data was collected.
If the method used was Absorbance, the wavelength indicates the wavelength of light at which the measurements were taken.
Format: Multiple
[[1]] Method
Header: Method
Class: Expression
Programmatic Pattern: Absorbance|Nephelometry
[[2]] Instrument Model
Header: Instrument Model
Class: Link
Programmatic Pattern: _Link
Relation: Model[Instrument]
[[3]] Beam Aperture
Header: Beam Aperture
Class: Real
Unit: 1 millimeter
Programmatic Pattern: _Real
[[4]] Beam Intensity
Header: Beam Intensity
Class: Real
Unit: 1 percent
Programmatic Pattern: PercentP
[[5]] Integration Time
Header: Integration Time
Class: Real
Unit: 1 second
Programmatic Pattern: TimeP
[[6]] Wavelength
Header: Wavelength
Class: Real
Unit: 1 nanometer
Programmatic Pattern: DistanceP
Last modified on Mon 26 Sep 2022 15:43:53