Model[Sample]
Model information for a reagent used in an experiment.
Organizational Information
Name
Name of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: A string.
ID
ID of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: The ID of this object.
Object
Object of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Model[Sample, _String]
Pattern Description: The object reference of this object.
Type
Type of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Model[Sample]
Pattern Description: Model[Sample]
Notebook
Notebook this object belongs to.
Format: Single
Class: Link
Programmatic Pattern: _Link
Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
Relation: Object[LaboratoryNotebook][Objects]
Objects
Objects that represent instances of this model.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Sample][Model]
Synonyms
List of possible alternative names this model goes by.
Format: Multiple
Class: String
Programmatic Pattern: _String
Composition
The molecular composition of this model.
Format: Multiple
[[1]] Amount
Header: Amount
Class: VariableUnit
Programmatic Pattern: CompositionP
[[2]] Identity Model
Header: Identity Model
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule] | Model[Molecule, cDNA] | Model[Molecule, Oligomer] | Model[Molecule, Transcript] | Model[Molecule, Protein] | Model[Molecule, Protein, Antibody] | Model[Molecule, Carbohydrate] | Model[Molecule, Polymer] | Model[Resin] | Model[Resin, SolidPhaseSupport] | Model[Lysate] | Model[ProprietaryFormulation] | Model[Virus] | Model[Cell] | Model[Cell, Mammalian] | Model[Cell, Bacteria] | Model[Cell, Yeast] | Model[Tissue] | Model[Material] | Model[Species]
OpticalComposition
Describes the molar composition (in percent) of enantiomers, if this sample contains one of the enantiomers or is a mixture of enantiomers.
Format: Multiple
[[1]] Amount
Header: Amount
Class: Real
Unit: 1 percent
Programmatic Pattern: RangeP[-100 Percent, 100 Percent]
[[2]] Identity Model
Header: Identity Model
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule] | Model[Molecule, cDNA] | Model[Molecule, Oligomer] | Model[Molecule, Transcript] | Model[Molecule, Protein] | Model[Molecule, Protein, Antibody] | Model[Molecule, Carbohydrate] | Model[Molecule, Polymer] | Model[Resin] | Model[Resin, SolidPhaseSupport] | Model[Lysate] | Model[ProprietaryFormulation] | Model[Virus] | Model[Cell] | Model[Cell, Mammalian] | Model[Cell, Bacteria] | Model[Cell, Yeast] | Model[Tissue] | Model[Material] | Model[Species]
Solvent
Describes the composition of the solvent of this model.
Format: Multiple
[[1]] Amount
Header: Amount
Class: Real
Unit: 1 VolumePercent
Programmatic Pattern: VolumePercentP
[[2]] Component
Header: Component
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule] | Model[Molecule, cDNA] | Model[Molecule, Oligomer] | Model[Molecule, Transcript] | Model[Molecule, Protein] | Model[Molecule, Protein, Antibody] | Model[Molecule, Carbohydrate] | Model[Molecule, Polymer] | Model[Resin] | Model[Resin, SolidPhaseSupport] | Model[Lysate] | Model[ProprietaryFormulation] | Model[Virus] | Model[Cell] | Model[Cell, Mammalian] | Model[Cell, Bacteria] | Model[Cell, Yeast] | Model[Tissue] | Model[Material] | Model[Species] | Model[Sample]
UsedAsSolvent
Indicates if this sample is used as a solvent.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
ConcentrationFactor
The amount by which this the sample must be diluted with its Solvents in order to form standard ratio of Models for 1X buffer.
Format: Single
Class: Real
Programmatic Pattern: GreaterP[0]
AlternativeStock Concentrations
The models that when diluted with their Solvents by ConcentrationFactor form equivalent 1X versions of the same buffer.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Grade
The purity of this model, encapsulating a set of purity standards for specific uses.
Format: Single
Class: Expression
Programmatic Pattern: GradeP
AlternativeForms
Models of other samples with different grades, hydration states, monobasic/dibasic forms, etc.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample][AlternativeForms]
Deprecated
Indicates that this model is historical and no longer used in the ECL.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Authors
The people who created this model.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[User]
Analytes
The molecular identities of primary interest in this sample.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Molecule] | Model[Molecule, cDNA] | Model[Molecule, Oligomer] | Model[Molecule, Transcript] | Model[Molecule, Protein] | Model[Molecule, Protein, Antibody] | Model[Molecule, Carbohydrate] | Model[Molecule, Polymer] | Model[Resin] | Model[Resin, SolidPhaseSupport] | Model[Lysate] | Model[ProprietaryFormulation] | Model[Virus] | Model[Cell] | Model[Cell, Mammalian] | Model[Cell, Bacteria] | Model[Cell, Yeast] | Model[Tissue] | Model[Material] | Model[Species]
Tags
User-supplied labels that are used for the management and organization of samples. If an aliquot is taken out of this sample, the new sample that is generated will inherit this sample's tags.
Format: Multiple
Class: String
Programmatic Pattern: _String
UNII
Unique Ingredient Identifier of compounds based on the unified identification scheme of FDA.
Format: Single
Class: String
Programmatic Pattern: _String
Waste
Indicates if samples of this model are a collection of other samples that are to be thrown out.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
WasteType
Indicates the type of waste collected in this sample.
Format: Single
Class: Expression
Programmatic Pattern: WasteTypeP
Physical Properties
State
The physical state of the sample when well solvated at room temperature and pressure.
Format: Single
Class: Expression
Programmatic Pattern: ModelStateP
SampleHandling
The method by which this sample should be manipulated in the lab when transfers out of the sample are requested.
Format: Single
Class: Expression
Programmatic Pattern: SampleHandlingP
CellType
The primary types of cells that are contained within this sample.
Format: Single
Class: Expression
Programmatic Pattern: CellTypeP
CultureAdhesion
The default type of cell culture (adherent or suspension) that should be performed when growing these cells. If a cell line can be cultured via an adherent or suspension culture, this is set to the most common cell culture type for the cell line.
Format: Single
Class: Expression
Programmatic Pattern: CultureAdhesionP
ProductDocumentationFiles
PDFs of any product documentation provided by the supplier of this model.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[EmeraldCloudFile]
MeltingPoint
Melting temperature of the pure substance at atmospheric pressure.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
BoilingPoint
Temperature at which the pure substance boils under atmospheric pressure.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
VaporPressure
Vapor pressure of the substance at room temperature.
Format: Single
Class: Real
Unit: 1 kilopascal
Programmatic Pattern: GreaterEqualP[0 Kilo Pascal]
Viscosity
The viscosity of the substance in pure form at room temperature.
Format: Single
Class: Real
Unit: 1 second pascal
Programmatic Pattern: GreaterEqualP[0 Pascal Second]
RefractiveIndex
The refractive index of the substance at 20 degree Celsius.
Format: Single
Class: Real
Programmatic Pattern: GreaterP[1]
pKa
The logarithmic acid dissociation constants of the substance at room temperature.
Format: Multiple
Class: Real
Programmatic Pattern: NumericP
Density
Known density of samples of this model at room temperature.
Format: Single
Class: Real
Unit: 1 gram per milliliter
Programmatic Pattern: 0 Gram
Hold[GreaterP[------ Milli]]
Liter
ParticleWeight
The weight of a single particle of the sample, if the sample is a powder.
Format: Single
Class: Real
Unit: 1 gram
Programmatic Pattern: GreaterP[0 Gram]
SurfaceTension
The surface tension of the substance in pure form at room temperature.
Format: Single
Class: Real
Unit: 1 millinewton per meter
Programmatic Pattern: Newton
Hold[GreaterEqualP[0 Milli ------]]
Meter
ExtinctionCoefficients
A measure of how strongly this sample absorbs light at a particular wavelength.
Format: Multiple
[Wavelength]
Header: Wavelength
Class: VariableUnit
[ExtinctionCoefficient]
Header: ExtinctionCoefficient
Class: VariableUnit
InitialConcentration
The initial manufacturer concentration for samples of this model.
Format: Single
Class: Real
Unit: 1 micromolar
Programmatic Pattern: GreaterEqualP[0 Micromolar]
InitialMassConcentration
The initial manufacturer mass of the consitutent(s) divided by the volume of the mixture for samples of this model.
Format: Single
Class: Real
Unit: 1 gram per liter
Programmatic Pattern: 0 Gram
Hold[GreaterEqualP[------]]
Liter
pH
The logarithmic concentration of hydrogen ions of the substance at room temperature.
Format: Single
Class: Real
Programmatic Pattern: RangeP[0, 14]
NominalParticleSize
The manufacture designated size distribution of particles in the sample model.
Format: Single
Class: Distribution
Unit: 1 nanometer
Programmatic Pattern: DistributionP[Nanometer]
Conductivity
The conductivity of the substance.
Format: Single
Class: Expression
Programmatic Pattern: Siemens
Hold[DistributionP[Micro ----------]]
Centimeter
Tablet
Indicates if this model is in the form of a small disk or cylinder of compressed solid substance in a measured amount.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
TabletWeight
The mean mass of a single tablet of this model.
Format: Single
Class: Real
Unit: 1 gram
Programmatic Pattern: GreaterEqualP[0 Gram]
TabletWeightDistribution
The distribution of the single tablet weights measured from multiple samplings.
Format: Single
Class: Expression
Programmatic Pattern: DistributionP[Gram]
FixedAmounts
The pre-measured amounts in which samples of this model are always stored.
Format: Multiple
Class: VariableUnit
Programmatic Pattern: GreaterP[0 Milliliter] | GreaterP[0 Gram]
TransferOutSolventVolumes
For each member of FixedAmounts, the amount of the dissolution solvent required to solvate the fixed amount component in this model.
Format: Multiple
Class: Real
Unit: 1 milliliter
Programmatic Pattern: GreaterP[0 Liter]
Resuspension
Indicates if one of the components in the stock solution is a sample which can only be prepared by adding a solution to its original container to dissolve it. The dissolved sample can be optionally removed from the original container for other preparation steps.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
SingleUse
Indicates if this model of sample must be used only once and then disposed of after use.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
NucleicAcidFree
Indicates if this model of sample is tested to be not contaminated with DNA and RNA by the manufacturer.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
PyrogenFree
Indicates if this model of sample is tested to be not contaminated with endotoxin by the manufacturer.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
ReversePipetting
Indicates if reverse pipetting technique should be used when transferring this sample via pipette. It is recommended to set ReversePipetting->True if this sample foams or forms bubbles easily.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
Inventory
Products
Products ordering information for this model.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Product][ProductModel]
KitProducts
Products ordering information for this model if this model is part of one or more kits.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
MixedBatchProducts
Products ordering information for this model if this model is part of one or more mixed batches.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
ServiceProviders
Service companies that provide synthesis of this model as a service.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Storage Information
Expires
Indicates if samples of this model expire after a given amount of time.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
ShelfLife
The length of time after DateCreated that samples of this model are recommended for use before they should be discarded.
Format: Single
Class: Real
Unit: 1 day
Programmatic Pattern: GreaterP[0 Day]
UnsealedShelfLife
The length of time after DateUnsealed that samples of this model are recommended for use before they should be discarded.
Format: Single
Class: Real
Unit: 1 day
Programmatic Pattern: GreaterP[0 Day]
PreferredWashBin
Indicates the recommended bin for dishwashing this container.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Container, WashBin]
LightSensitive
Determines if the sample reacts or degrades in the presence of light and should be stored in the dark to avoid exposure.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
DefaultStorageCondition
The condition in which samples of this model are stored when not in use by an experiment; this condition may be overridden by the specific storage condition of any given sample.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[StorageCondition]
TransportChilled
Indicates if samples of this model should be refrigerated during transport when used in experiments.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
TransportWarmed
The temperature that samples of this model should be incubated at while transported between instruments during experimentation.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
TransportCondition
Specifies how the samples of this model should be transported when in use in the lab.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[TransportCondition]
TransferTemperature
The temperature that samples of this model should be at before any transfers using this sample occur.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
ThawTemperature
The default temperature that samples of this model should be thawed at before using in experimentation.
Format: Single
Class: Real
Unit: 1 degree Celsius
Programmatic Pattern: GreaterP[0 Kelvin]
ThawTime
The default time that samples of this model should be thawed before using in experimentation. If the samples are still not thawed after this time, thawing will continue until the samples are fully thawed.
Format: Single
Class: Real
Unit: 1 minute
Programmatic Pattern: GreaterP[0 Second]
MaxThawTime
The default maximum time that samples of this model should be thawed before using in experimentation.
Format: Single
Class: Real
Unit: 1 minute
Programmatic Pattern: GreaterP[0 Second]
ThawMixType
The default style of motion used to mix samples of this model following thawing.
Format: Single
Class: Expression
Programmatic Pattern: MixTypeP
ThawMixRate
The default frequency of rotation the mixing instrument uses to mix samples of this model following thawing.
Format: Single
Class: Real
Unit: 1 revolution per minute
Programmatic Pattern: GreaterP[0 RPM]
ThawNumberOfMixes
The default number of times samples of this model are mixed by inversion or pipetting up and down following thawing.
Format: Single
Class: Integer
Programmatic Pattern: GreaterP[0]
PipettingMethod
The pipetting parameters used to manipulate samples of this model; these parameters may be overridden by direct specification of pipetting parameters in manipulation primitives.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Model[Method, Pipetting][Models]
Parafilm
Indicates if containers that contain this sample model should have their covers sealed with parafilm by default.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
AluminumFoil
Indicates if containers that contain this sample model should be wrapped in aluminum foil to protect the container contents from light by default.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
Dimensions & Positions
Dimensions
The external dimensions of this model of container.
Format: Single
[[1]] X Direction (Width)
Header: X Direction (Width)
Class: Real
Unit: 1 meter
Programmatic Pattern: GreaterEqualP[0 Meter]
[[2]] Y Direction (Depth)
Header: Y Direction (Depth)
Class: Real
Unit: 1 meter
Programmatic Pattern: GreaterEqualP[0 Meter]
[[3]] Z Direction (Height)
Header: Z Direction (Height)
Class: Real
Unit: 1 meter
Programmatic Pattern: GreaterEqualP[0 Meter]
Mixing
ThawMixTime
The default duration for which samples of this model are mixed following thawing.
Format: Single
Class: Real
Unit: 1 minute
Programmatic Pattern: GreaterP[0 Minute]
Health & Safety
Sterile
Indicates that this model of sample arrives sterile from the manufacturer.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
RNaseFree
Indicates that this model of sample is free of any RNases.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
Radioactive
Indicates if samples of this model emit substantial ionizing radiation.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Ventilated
Indicates if samples of this model must be handled in a ventilated enclosures.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
InertHandling
Indicates if samples of this model must be handled in a glove box.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
BiosafetyHandling
Indicates if samples of this model must be handled in a biosafety cabinet.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
GloveBoxIncompatible
Indicates if samples of this model cannot be used inside of the glove box due high volatility and/or detrimental reactivity with the catalyst in the glove box that is used to remove traces of water and oxygen. Sulfur and sulfur compounds (such as H2S, RSH, COS, SO2, SO3), halides, halogen (Freon), alcohols, hydrazine, phosphene, arsine, arsenate, mercury, and saturation with water may deactivate the catalyst.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
GloveBoxBlowerIncompatible
Indicates that the glove box blower must be turned off to prevent damage to the catalyst in the glove box that is used to remove traces of water and oxygen when manipulating samples of this model inside of the glove box.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Flammable
Indicates if samples of this model are easily set aflame under standard conditions.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Acid
Indicates if samples of this model are strong acids (pH <= 2) and require dedicated secondary containment during storage.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Base
Indicates if samples of this model are strong bases (pH >= 12) and require dedicated secondary containment during storage.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Pyrophoric
Indicates if samples of this model can ignite spontaneously upon exposure to air.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
WaterReactive
Indicates if samples of this model react spontaneously upon exposure to water.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Fuming
Indicates if samples of this model emit fumes spontaneously when exposed to air.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Aqueous
Indicates if samples of this model are a solution in water.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Anhydrous
Indicates if samples of this model do not contain water.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
HazardousBan
Indicates if samples of this model are currently banned from usage in the ECL because the facility isn't yet equiped to handle them.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
ExpirationHazard
Indicates if samples of this model become hazardous once they are expired and therefore must be automatically disposed of when they pass their expiration date.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
ParticularlyHazardous Substance
Indicates if special precautions should be taken in handling this substance as indicated by the MSDS classification.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
DrainDisposal
Indicates if samples of this model may be safely disposed down a standard drain.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
Pungent
Indicates if samples of this model have a strong odor.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
MSDSRequired
Indicates if an MSDS is applicable for this model.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
MSDSFile
PDF of the models MSDS (Materials Saftey Data Sheet).
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[EmeraldCloudFile]
NFPA
The National Fire Protection Association (NFPA) 704 hazard diamond classification for the substance.
Format: Single
Class: Expression
Programmatic Pattern: NFPAP
DOTHazardClass
The Department of Transportation hazard classification of the substance.
Format: Single
Class: String
Programmatic Pattern: DOTHazardClassP
BiosafetyLevel
The Biosafety classification of the substance.
Format: Single
Class: Expression
Programmatic Pattern: BiosafetyLevelP
Compatibility
IncompatibleMaterials
A list of materials that would be damaged if wetted by this model.
Format: Multiple
Class: Expression
Programmatic Pattern: MaterialP | None
WettedMaterials
The materials of which this sample is made that may come in direct contact with fluids.
Format: Multiple
Class: Expression
Programmatic Pattern: MaterialP
LiquidHandlerIncompatible
Indicates if this sample cannot be reliably aspirated or dispensed on an automated liquid handling robot.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
UltrasonicIncompatible
Indicates if volume measurements of samples of this model cannot be performed via the ultrasonic distance method due to vapors interfering with the reading.
Format: Single
Class: Expression
Programmatic Pattern: BooleanP
PreferredMALDIMatrix
The model of the matrix that is best suited for MALDI mass spectrometry of this sample.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Model[Sample, Matrix]
Qualifications & Maintenance
QualificationFrequency
The model Qualifications and their required frequencies.
Format: Multiple
[[1]] Model Qualification
Header: Model Qualification
Class: Link
Programmatic Pattern: _Link
Relation: Model[Qualification][Targets]
[[2]] Time Interval
Header: Time Interval
Class: Real
Unit: 1 day
Programmatic Pattern: GreaterP[0 Day]
MaintenanceFrequency
The model maintenances and their required frequencies.
Format: Multiple
[[1]] Model Maintenance
Header: Model Maintenance
Class: Link
Programmatic Pattern: _Link
Relation: Model[Maintenance][Targets]
[[2]] Time Interval
Header: Time Interval
Class: Real
Unit: 1 day
Programmatic Pattern: GreaterP[0 Day]
ContinuousOperation
Indicates if the sample is required to operate continuously in the lab, regardless of if it is InUse by a specific protocol.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
General
Protocols
All protocols that used this sample at any point during their execution in the lab.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Protocol][SamplesIn]
ThawCellsMethod
The default method by which to thaw cryovials of this sample model.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, ThawCells]
WashCellsMethod
The default method by which to wash cultures of this sample model.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, WashCells]
ChangeMediaMethod
The default method by which to change the media for cultures of this sample model.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Method, ChangeMedia]
Sample Preparation
Preparable
Indicates if this samples/items of this model maybe prepared as needed during the course of an experiment.
Format: Single
Class: Boolean
Programmatic Pattern: BooleanP
Last modified on Mon 26 Sep 2022 15:43:56