Organizational Information

Name

Name of this Object.

Format: Single

Class: String

Programmatic Pattern: _String

Pattern Description: A string.

ID

ID of this Object.

Format: Single

Class: String

Programmatic Pattern: _String

Pattern Description: The ID of this object.

Object

Object of this Object.

Format: Single

Class: Expression

Programmatic Pattern: Object[Analysis, FlowCytometry, _String]

Pattern Description: The object reference of this object.

Type

Type of this Object.

Format: Single

Class: Expression

Programmatic Pattern: Object[Analysis, FlowCytometry]

Pattern Description: Object[Analysis, FlowCytometry]

Notebook

Notebook this object belongs to.

Format: Single

Class: Link

Programmatic Pattern: _Link

Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].

Relation: Object[LaboratoryNotebook][Objects]

Author

The person who ran the analysis.

Format: Single

Class: Link

Programmatic Pattern: _Link

Relation: Object[User]

General

UnresolvedOptions

The initial options entered into the analysis function that generated this object, along with the default values for any unspecified options.

Format: Single

Class: Compressed

Programmatic Pattern: {_Rule...}

ResolvedOptions

The final options used by the analysis function, after automatic options have been determined from the input and unresolved options.

Format: Single

Class: Compressed

Programmatic Pattern: {_Rule...}

Reference

The objects containing the source data used in this analysis.

Format: Multiple

Class: Link

Programmatic Pattern: _Link

ReferenceField

The field in the Reference object containing the source data.

Format: Single

Class: Expression

Programmatic Pattern: FieldP[Output -> Short]

ClustersAnalyses

Clustering analyses used in this flow cytometry analysis.

Format: Multiple

Class: Link

Programmatic Pattern: _Link

Relation: Object[Analysis, Clusters][FlowCytometryAnalyses]

Analysis & Reports

ClusterLabels

The name assigned to each cluster of cells partitioned in the analysis.

Format: Multiple

Class: String

Programmatic Pattern: _String

ClusterAssignments

For each member of ClusterLabels, the putative cell identity model associated with that cluster.

Format: Multiple

Class: Link

Programmatic Pattern: _Link

Relation: Model[Cell]

CellCounts

For each member of ClusterLabels, the number of cells in that cluster per milliliter of input sample.

Format: Multiple

Class: Real

Unit: 1 reciprocal milliliter

Programmatic Pattern: 0. Hold[GreaterEqualP[----------]] Milliliter

AbsoluteCellCounts

For each member of ClusterLabels, the absolute number of cells in that cluster.

Format: Multiple

Class: Integer

Programmatic Pattern: GreaterEqualP[0, 1]

NumberOfDimensions

The dimensionality of each data point in the reference flow cytometry data. There are three dimensions (peak height, width, and area) per detector for which data was collected.

Format: Single

Class: Integer

Programmatic Pattern: _Integer

DimensionLabels

A label indicating the detector (excitation and emission wavelengths) and measurement (peak height, width, or area) to which each dimension of the reference flow cytometry data corresponds.

Format: Multiple

Class: String

Programmatic Pattern: _String

DimensionUnits

For each member of DimensionLabels, the physical units associated with that dimension.

Format: Multiple

Class: Expression

Programmatic Pattern: UnitsP[]

ClusteredData

An association containing reference flow cytometry data points partitioned into groups, labeled by names from ClusterLabels.

Format: Single

Class: Compressed

Programmatic Pattern: _Association

Data Processing

CompensationMatrix

The compensation matrix used to compensate for spillover of fluorophores into other detectors.

Format: Single

Class: Link

Programmatic Pattern: _Link

Relation: Object[Analysis, CompensationMatrix]

ClusterAnalysisTree

A directed tree graph, where each node is a clustering analysis packet, describing the sequence of clustering analyses used to generate this flow cytometry analysis.

Format: Single

Class: Compressed

Programmatic Pattern: _Graph