Object[Analysis, TotalProteinQuantification]
Analysis of absorbance data from a total protein quantification assay conducted on lysate samples.
Organizational Information
Name
Name of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: A string.
ID
ID of this Object.
Format: Single
Class: String
Programmatic Pattern: _String
Pattern Description: The ID of this object.
Object
Object of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Object[Analysis, TotalProteinQuantification, _String]
Pattern Description: The object reference of this object.
Type
Type of this Object.
Format: Single
Class: Expression
Programmatic Pattern: Object[Analysis, TotalProteinQuantification]
Pattern Description: Object[Analysis, TotalProteinQuantification]
Notebook
Notebook this object belongs to.
Format: Single
Class: Link
Programmatic Pattern: _Link
Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
Relation: Object[LaboratoryNotebook][Objects]
Author
The person who ran the analysis.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[User]
General
UnresolvedOptions
The initial options entered into the analysis function that generated this object, along with the default values for any unspecified options.
Format: Single
Class: Compressed
Programmatic Pattern: {_Rule...}
ResolvedOptions
The final options used by the analysis function, after automatic options have been determined from the input and unresolved options.
Format: Single
Class: Compressed
Programmatic Pattern: {_Rule...}
Reference
The objects containing the source data used in this analysis.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Qualification, PipettingLinearity][FittingAnalysis] | Object[Data, AbsorbanceSpectroscopy][AbsorbanceSpectrumPeaksSource] | Object[Data, AbsorbanceSpectroscopy][QuantificationAnalyses] | Object[Data, AbsorbanceSpectroscopy][SmoothingAnalyses] | Object[Data, AbsorbanceIntensity][QuantificationAnalyses] | Object[Data, AgaroseGelElectrophoresis][SampleElectropherogramPeaksAnalyses] | Object[Data, AgaroseGelElectrophoresis][MarkerElectropherogramPeaksAnalyses] | Object[Data, AgaroseGelElectrophoresis][PostSelectionPeaksAnalyses] | Object[Data, AgaroseGelElectrophoresis][SmoothingAnalyses] | Object[Data, Appearance, Colonies][ColonyAnalysis] | Object[Data, MeltingCurve][MeltingAnalyses] | Object[Data, MeltingCurve][FluorescenceSpectraAnalyses] | Object[Data, MeltingCurve][AggregationAnalyses] | Object[Data, MeltingCurve][ThermalShiftAnalyses] | Object[Data, BioLayerInterferometry][QuantitationAnalysis] | Object[Data, BioLayerInterferometry][KineticsAnalysis] | Object[Data, BioLayerInterferometry][BinningAnalysis] | Object[Data, BioLayerInterferometry][DetectionLimitAnalysis] | Object[Data, CapillaryGelElectrophoresisSDS][LadderAnalyses] | Object[Data, CapillaryGelElectrophoresisSDS][SmoothingAnalyses] | Object[Data, CapillaryGelElectrophoresisSDS][PeaksAnalyses] | Object[Data, CapillaryGelElectrophoresisSDS][RelativeMigrationPeaksAnalyses] | Object[Data, CapillaryGelElectrophoresisSDS][FitAnalyses] | Object[Data, CapillaryIsoelectricFocusing][SmoothingAnalyses] | Object[Data, CapillaryIsoelectricFocusing][PeaksAnalyses] | Object[Data, CapillaryIsoelectricFocusing][FitAnalyses] | Object[Data, Chromatography][StandardAnalyses] | Object[Data, Chromatography][FractionPickingAnalysis] | Object[Data, Chromatography][ConductancePeaksAnalyses] | Object[Data, Chromatography][AbsorbancePeaksAnalyses] | Object[Data, Chromatography][SecondaryAbsorbancePeaksAnalyses] | Object[Data, Chromatography][Absorbance3DPeaksAnalyses] | Object[Data, Chromatography][FluorescencePeaksAnalyses] | Object[Data, Chromatography][SecondaryFluorescencePeaksAnalyses] | Object[Data, Chromatography][TertiaryFluorescencePeaksAnalyses] | Object[Data, Chromatography][QuaternaryFluorescencePeaksAnalyses] | Object[Data, Chromatography][ScatteringPeaksAnalyses] | Object[Data, Chromatography][FIDResponsePeaksAnalyses] | Object[Data, Chromatography][ChargePeaksAnalyses] | Object[Data, Chromatography][SmoothingAnalyses] | Object[Data, Chromatography][pHPeaksAnalyses] | Object[Data, Chromatography][RefractiveIndexPeaksAnalysis] | Object[Data, Chromatography][CircularDichroismPeaksAnalysis] | Object[Data, Chromatography][MultiAngleLightScatteringAnalyses] | Object[Data, Chromatography][DynamicLightScatteringAnalyses] | Object[Data, ChromatographyMassSpectra][IonAbundance3DPeaksAnalyses] | Object[Data, ChromatographyMassSpectra][IonAbundancePeaksAnalyses] | Object[Data, ChromatographyMassSpectra][MassSpectrumPeaksAnalyses] | Object[Data, ChromatographyMassSpectra][AbsorbancePeaksAnalyses] | Object[Data, ChromatographyMassSpectra][Absorbance3DPeaksAnalyses] | Object[Data, ChromatographyMassSpectra][DownsamplingAnalyses] | Object[Data, ChromatographyMassSpectra][SmoothingAnalyses] | Object[Data, CircularDichroism][SmoothingAnalyses] | Object[Data, CircularDichroism][StructureQuantificationAnalyses] | Object[Data, DifferentialScanningCalorimetry][HeatingCurvePeaksAnalyses] | Object[Data, DifferentialScanningCalorimetry][SmoothingAnalyses] | Object[Data, DNASequencing][SequenceAnalyses] | Object[Data, DynamicFoamAnalysis][BubbleRadiusAnalyses] | Object[Data, FlowCytometry][FlowCytometryAnalyses] | Object[Data, FluorescenceKinetics][RateFittingAnalyses] | Object[Data, FluorescencePolarizationKinetics][RateFittingAnalyses] | Object[Data, LuminescenceKinetics][RateFittingAnalyses] | Object[Data, FluorescenceSpectroscopy][EmissionSpectrumPeaksAnalyses] | Object[Data, FluorescenceSpectroscopy][ExcitationSpectrumPeaksAnalyses] | Object[Data, FluorescenceSpectroscopy][SmoothingAnalyses] | Object[Data, LuminescenceSpectroscopy][PeaksAnalyses] | Object[Data, LuminescenceSpectroscopy][SmoothingAnalyses] | Object[Data, MeltingCurve][InitialIntensityPeaksAnalyses] | Object[Data, MeltingCurve][FinalIntensityPeaksAnalyses] | Object[Data, MeltingCurve][InitialMassPeaksAnalyses] | Object[Data, MeltingCurve][FinalMassPeaksAnalyses] | Object[Data, MeltingCurve][DynamicLightScatteringAnalyses] | Object[Data, FluorescenceThermodynamics][MeltingAnalyses] | Object[Data, MassSpectrometry][MassSpectrumPeaksAnalyses] | Object[Data, MassSpectrometry][SmoothingAnalyses] | Object[Data, Microscope][AdjustmentAnalyses] | Object[Data, Microscope][CellCountAnalyses] | Object[Data, Microscope][MicroscopeOverlay] | Object[Data, ImageCells][CellCountAnalyses] | Object[Data, ImageCells][MicroscopeOverlay] | Object[Data, Nephelometry][QuantificationAnalyses] | Object[Data, NephelometryKinetics][GrowthCurveAnalyses] | Object[Data, NephelometryKinetics][SolubilityAnalyses] | Object[Data, NMR][NMRSpectrumPeaksAnalyses] | Object[Data, NMR][SmoothingAnalyses] | Object[Data, NMR2D][NMRSpectrumPeaksAnalyses] | Object[Data, PAGE][LanePeaksAnalyses] | Object[Data, PAGE][LadderAnalyses] | Object[Data, PAGE][SmoothingAnalyses] | Object[Data, qPCR][QuantificationCycleAnalyses] | Object[Data, TotalProteinDetection][FitSourceSpectra] | Object[Data, TotalProteinDetection][MassSpectrumPeaksAnalyses] | Object[Data, TotalProteinDetection][LadderAnalyses] | Object[Data, TLC][LanePeaksAnalyses] | Object[Data, TLC][SmoothingAnalyses] | Object[Data, Volume][QuantificationAnalyses] | Object[Data, Western][FitSourceSpectra] | Object[Data, Western][MassSpectrumPeaksAnalyses] | Object[Data, Western][LadderAnalyses] | Object[Data, Western][SmoothingAnalyses] | Object[Analysis, MeltingPoint][TopBaseline] | Object[Analysis, MeltingPoint][BottomBaseline] | Object[Analysis, MeltingPoint][Thermodynamics] | Object[Analysis, QuantificationCycle][CopyNumberAnalyses] | Object[Analysis, QuantificationCycle][StandardCurveAnalyses] | Object[Analysis, Composition][StandardCurveFitAnalyses] | Object[Analysis, Ladder][StandardFit] | Object[Analysis, Thermodynamics][Fit] | Object[Analysis, Fit][ParallelLineAnalyses] | Object[Data, XRayDiffraction][StructureAnalyses] | Object[Data, XRayDiffraction][DiffractionPeaksAnalyses] | Object[Data, XRayDiffraction][SmoothingAnalyses] | Object[Data, IRSpectroscopy][AbsorbanceSpectrumPeaksSource] | Object[Data, IRSpectroscopy][SmoothingAnalyses] | Object[Protocol, FlowCytometry][CompensationMatrixAnalyses] | Object[Protocol, TotalProteinQuantification][QuantificationAnalyses] | Object[Data, CircularDichroism][CircularDichroismPeaksAnalysis] | Object[Data, DynamicLightScattering][MassDistributionAnalyses] | Object[Data, DynamicLightScattering][IntensityDistributionAnalyses] | Object[Data, DynamicLightScattering][DynamicLightScatteringAnalyses] | Object[DesignOfExperiment][DesignOfExperimentAnalyses] | Object[Protocol, ThermalShift][DynamicLightScatteringLoadingAnalyses] | Object[Protocol, DynamicLightScattering][DynamicLightScatteringLoadingAnalyses] | Object[Data, DifferentialScanningCalorimetry][Analyses]
ReferenceField
The field in the Reference object containing the source data.
Format: Single
Class: Expression
Programmatic Pattern: FieldP[Output -> Short]
SamplesIn
The samples for which the total protein concentration is being quantified.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Sample]
AssaySamples
For each member of SamplesIn, the samples (SamplesIn or diluted input samples) which are mixed with the QuantificationReagent in the QuantificationPlate.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Sample]
AssaySamplesDilutionFactors
For each member of AssaySamples, a measure of the portion of the AssaySample that is comprised of the SampleIn (the ratio of AliquotVolume to the AssayVolume of the SamplePrep Aliquot step). For example, an AssaySampleDilutionFactor of 0.02 indicates that the SampleIn was diluted 50-fold to create the AssaySample.
Format: Multiple
Class: Real
Programmatic Pattern: RangeP[0, 1]
LoadingVolume
The amount of each AssaySample, ProteinStandard, or diluted ConcentratedProteinStandard that is mixed with the QuantificationReagent in the QuantificationPlate before the absorbance or fluorescence of the mixture at the QuantificationWavelength is determined.
Format: Single
Class: Real
Unit: 1 microliter
Programmatic Pattern: GreaterEqualP[0 Microliter]
QuantificationReagent
The sample that is added to the ProteinStandards (or diluted ConcentratedProteinStandard) and AssaySamples in the QuantificationPlate. The QuantificationReagent undergoes a change in absorbance and/or fluorescence in the presence of proteins. This change in absorbance or fluorescence is used to quantify the amount of protein present in the input samples and ProteinStandards.
Format: Single
Class: Link
Programmatic Pattern: _Link
QuantificationReagentVolume
The amount of the QuantificationReagent that is added to each appropriate well of the QuantificationPlate. The QuantificationReagent is mixed with either the AssaySamples or the ProteinStandards (or diluted ConcentratedProteinStandard) in the QuantificationPlate.
Format: Single
Class: Real
Unit: 1 microliter
Programmatic Pattern: GreaterEqualP[0 Microliter]
StandardCurveConcentrations
The mass concentrations of the standard samples used to create the standard curve. The standard concentration curve plotting Absorbance or Fluorescence versus mass concentration is used to determine the protein concentration of the input samples.
Format: Multiple
Class: Real
Unit: 1 milligram per milliliter
Programmatic Pattern: 0 Milligram
Hold[GreaterEqualP[-----------]]
Milliliter
StandardCurveReplicates
The number of wells that each concentration of ProteinStandards (or diluted ConcentratedProteinStandard) and the StandardCurveBlank is added to in the QuantificationPlate. The StandardCurve is calculated by averaging the absorbance or fluorescence values of the protein standards at each concentration and plotting that average value versus the MassConcentration.
Format: Single
Class: Integer
Programmatic Pattern: GreaterP[0, 1]
ExcitationWavelength
The wavelength of light at which the protein-bound QuantificationReagent is excited.
Format: Single
Class: Real
Unit: 1 nanometer
Programmatic Pattern: GreaterP[0 Nanometer]
QuantificationWavelengths
The wavelength(s) at which quantification analysis is performed to determine concentration.
Format: Multiple
Class: Real
Unit: 1 nanometer
Programmatic Pattern: GreaterP[0 Nanometer]
QuantificationStandards
The mixtures of QuantificationReagent and StandardCurveBlank and ProteinStandards (or dilute ConcentratedProteinStandard) in the QuantificationPlate whose absorbance or fluorescence values are used to create the StandardCurve.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Sample]
QuantificationSamples
For each member of AssaySamples, the mixture of AssaySample and QuantificationReagent in the QuantificationPlate whose absorbance or fluorescence value is used to calculate the AssaySamplesProteinConcentrations and the SamplesInProteinConcentrations from the StandardCurve.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Sample]
Analysis & Reports
StandardCurve
Standard curve fitting analysis characterizing the relationship between concentration and either absorbance or fluorescence.
Format: Single
Class: Link
Programmatic Pattern: _Link
Relation: Object[Analysis, Fit][PredictedValues]
AssaySamplesProtein Concentrations
For each member of AssaySamples, the protein concentration calculated from the corresponding absorbance or fluorescence value, and the StandardCurve.
Format: Multiple
Class: Real
Unit: 1 milligram per milliliter
Programmatic Pattern: 0 Milligram
Hold[GreaterEqualP[-----------]]
Milliliter
SamplesInConcentration Distributions
For each member of SamplesIn, the statistical distribution of the protein concentrations calculated by this analysis.
Format: Multiple
Class: Expression
Programmatic Pattern: Milligram
Hold[DistributionP[----------]]
Milliliter
SamplesInProtein Concentrations
For each member of SamplesIn, the protein concentration of the corresponding AssaySample divided by the AssaySampleDilutionFactor.
Format: Multiple
Class: Real
Unit: 1 milligram per milliliter
Programmatic Pattern: 0 Milligram
Hold[GreaterEqualP[-----------]]
Milliliter
StandardsSpectroscopyData
The spectroscopy data obtained from the mixtures of QuantificationReagent and standard samples (StandardCurveBlank and either ProteinStandards or diluted ConcentratedProteinStandard).
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
InputSamplesSpectroscopyData
For each member of QuantificationSamples, the spectroscopy data obtained from the mixtures of QuantificationReagent and AssaySamples.
Format: Multiple
Class: Link
Programmatic Pattern: _Link
Relation: Object[Data]
Last modified on Mon 26 Sep 2022 15:43:43