ecl-logo Documentation

Object[Analysis, Composition]

Analysis to calculate assay compositions of different chemical models through peak picking on HPLC protocol.

Organizational Information

    Name

    Name of this Object.
    Format: Single
    Class: String
    Programmatic Pattern: _String
    Pattern Description: A string.

    ID

    ID of this Object.
    Format: Single
    Class: String
    Programmatic Pattern: _String
    Pattern Description: The ID of this object.

    Object

    Object of this Object.
    Format: Single
    Class: Expression
    Programmatic Pattern: Object[Analysis, Composition, _String]
    Pattern Description: The object reference of this object.

    Type

    Type of this Object.
    Format: Single
    Class: Expression
    Programmatic Pattern: Object[Analysis, Composition]
    Pattern Description: Object[Analysis, Composition]

    Notebook

    Notebook this object belongs to.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].
    Relation: Object[LaboratoryNotebook][Objects]

    Author

    The person who ran the analysis.
    Format: Single
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[User]

General

Standards

    StandardSamples

    Samples with known profiles used to calibrate peak integrations and retention times for a given run.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Sample]

    StandardData

    For each standard sample, the chromatography trace generated for the standard's injection.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Data, Chromatography][ChromatogramCompositionAnalyses] | Object[Data, ChromatographyMassSpectra][ChromatogramCompositionAnalyses]

    StandardPositions

    For each member of StandardData, a list of the x-coordinates at which the peaks reach their maximum height.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    StandardHeights

    For each member of StandardData, the maximum height of the peak, where height is measured as distance from y-coordinate to baseline.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    StandardAreas

    For each member of StandardData, the area of the peak calculated as the total area from the bottom baseline up.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    StandardAdjacentResolutions

    For each member of StandardData, the USP peak resolution indicating the seperation of two adjacent peaks, calculated from half height width.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    StandardTailing

    For each member of StandardData, the USP tailing ratio, where values greater than one indicate right skew, values equal to one indicate symmetry, and values less than one indicate left skew.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    StandardLabels

    For each member of StandardData, the peak labels to identify different peaks.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{_String...}...}

    StandardModels

    For each member of StandardData, the model assignments corresponding to the picked peaks.
    Format: Multiple
    Class: Compressed
    Programmatic Pattern: {{(ObjectP[{Model[Sample], Model[Molecule]}] | Null | Model[Sample, Chemical, _String] | Link[Model[Sample, Chemical, _String], ___])...}...}

Analytes

    AssaySamples

    Input samples whose composition is about to be analyzed.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Sample]

    AssayData

    For each assay sample, the chromatography trace generated for the sample's injection.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Data, Chromatography][ChromatogramCompositionAnalyses] | Object[Data, ChromatographyMassSpectra][ChromatogramCompositionAnalyses]

    AssayPositions

    For each member of AssayData, a list of the x-coordinates at which the peaks reach their maximum height.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    AssayHeights

    For each member of AssayData, the maximum height of the peak, where height is measured as distance from y-coordinate to baseline.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    AssayAreas

    For each member of AssayData, the area of the peak calculated as the total area from the bottom baseline up.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    AssayAdjacentResolutions

    For each member of AssayData, the USP peak resolution indicating the seperation of two adjacent peaks, calculated from half height width.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    AssayTailing

    For each member of AssayData, the USP tailing ratio, where values greater than one indicate right skew, values equal to one indicate symmetry, and values less than one indicate left skew.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{GreaterEqualP[0]...}...}

    AssayLabels

    For each member of AssayData, the peak labels to identify different peaks.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{_String...}...}

    AssayModels

    For each member of AssayData, the model assignments corresponding to the picked peaks.
    Format: Multiple
    Class: Compressed
    Programmatic Pattern: {{(ObjectP[{Model[Sample], Model[Molecule]}] | Null | Model[Sample, Chemical, _String])...}...}

Analysis & Reports

    StandardCompositions

    For each member of StandardData, the chemical model compositions of each standard model in each standard sample.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{(_Quantity | _?NumericQ | _String)...}...}

    StandardCurveFitAnalyses

    The AnalyzeFit objects corresponding to the fitted curve for each chemical model in this analysis.
    Format: Multiple
    Class: Link
    Programmatic Pattern: _Link
    Relation: Object[Analysis][Reference]

    StandardCurveFitFunctions

    Fit function that calculates the expected composition (mg/ml) as a function of peak area, stored as a pure function.
    Format: Multiple
    Class: Expression
    Programmatic Pattern: _Function | _QuantityFunction

    DilutionFactors

    Each assay dilution due to aliquoting.
    Format: Multiple
    Class: Real
    Programmatic Pattern: GreaterP[0]

    AliquotCompositions

    For each member of AssayData, the chemical model compositions of the assay samples after aliquoting.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{(_Quantity | _?NumericQ | _String)...}...}

    AssayCompositions

    For each member of AssayData, the chemical model compositions of the assay samples before aliquoting.
    Format: Single
    Class: Compressed
    Programmatic Pattern: {{(_Quantity | _?NumericQ | _String)...}...}
Last modified on Mon 26 Sep 2022 15:43:43
EMERALD CLOUD LAB
15500 Wells Port Drive
Austin, TX 78728
© 2023 Emerald Cloud Lab, Inc.