Object[Analysis, EpitopeBinning]

Fitting of the unknown kinetic rates in a ReactionMechanism using experimental or simulated kinetic trajectories.

Organizational Information

Name

Name of this Object.

Format: Single

Class: String

Programmatic Pattern: _String

Pattern Description: A string.

ID

ID of this Object.

Format: Single

Class: String

Programmatic Pattern: _String

Pattern Description: The ID of this object.

Object

Object of this Object.

Format: Single

Class: Expression

Programmatic Pattern: Object[Analysis, EpitopeBinning, _String]

Pattern Description: The object reference of this object.

Type

Type of this Object.

Format: Single

Class: Expression

Programmatic Pattern: Object[Analysis, EpitopeBinning]

Pattern Description: Object[Analysis, EpitopeBinning]

Notebook

Notebook this object belongs to.

Format: Single

Class: Link

Programmatic Pattern: _Link

Pattern Description: An object of that matches ObjectP[Object[LaboratoryNotebook]].

Relation: Object[LaboratoryNotebook][Objects]

Author

The person who ran the analysis.

Format: Single

Class: Link

Programmatic Pattern: _Link

Relation: Object[User]

General

UnresolvedOptions

The initial options entered into the analysis function that generated this object, along with the default values for any unspecified options.

Format: Single

Class: Compressed

Programmatic Pattern: {_Rule...}

ResolvedOptions

The final options used by the analysis function, after automatic options have been determined from the input and unresolved options.

Format: Single

Class: Compressed

Programmatic Pattern: {_Rule...}

Reference

The objects containing the source data used in this analysis.

Format: Multiple

Class: Link

Programmatic Pattern: _Link

ReferenceField

The field in the Reference object containing the source data.

Format: Single

Class: Expression

Programmatic Pattern: FieldP[Output -> Short]

SamplesIn

The samples for which the epitope binning analysis was performed.

Format: Multiple

Class: Link

Programmatic Pattern: _Link

Relation: Object[Sample]

Threshold

The cutoff factor to distinguish between blocking and non-blocking pairs.

Format: Single

Class: Real

Programmatic Pattern: GreaterP[0]

SlowBindingThreshold

The cutoff factor to distinguish between blocking and non-blocking pairs for interactions when the competing species exhibits slow binding.

Format: Single

Class: Real

Programmatic Pattern: GreaterP[0]

SlowBindingSpecies

Species that are considered to bind more slowly during competition steps and were processed using SlowBinderThreshold.

Format: Multiple

Class: Expression

Programmatic Pattern: ObjectP[]

Analysis & Reports

CompetitionData

The measured binning response for a given pair of bound and unbound antibodies.

Format: Multiple

[[1]] Loaded Antibody

Header: Loaded Antibody

Class: Expression

Programmatic Pattern: ObjectP[]|_String

[[2]] Competing Antibody

Header: Competing Antibody

Class: Expression

Programmatic Pattern: ObjectP[]|_String

[[3]] Normalized Response

Header: Normalized Response

Class: Real

Programmatic Pattern: GreaterEqualP[-500]

BinnedInputs

A list of the input objects with their associated bins as defined by the Threshold.

Format: Multiple

[[1]] Antibody

Header: Antibody

Class: Expression

Programmatic Pattern: ObjectP[]|_String

[[2]] Bin

Header: Bin

Class: Integer

Programmatic Pattern: GreaterP[0]

Last modified on Mon 26 Sep 2022 15:43:43