Plotting By Subject Matter
Collection of plotting functions organized by the subject matter they may be relevant to.
Chromatography
PlotChromatography -- Generates a line plot of the detector response as a function of time of the provided chromatography data.
PlotChromatographyMassSpectra -- Generates a waterfall plot showing mass spectra collected from LCMS/GCMS as a function of time. Also provides utilities for generating 2D slices of the 3D (time, m/z, intensity) data.
PlotGradient -- Generates a line plot of the % composition of buffer as a function of time from the provided gradient method information.
PlotFractions -- Generates a line plot of detector response vs time from source chromatography data with the time slices representing the time for which fractions were collected highlighted from the provided fraction analysis object.
PlotLadder -- Generates a line plot of the strand length as a function of peak position for standard curve analysis of nucleic acids from the provided ladder analysis object.
PlotTLC -- Displays the result of a thin layer chromatography experiment.
Spectroscopy
PlotAbsorbanceQuantification -- Generates a plot of overlaid absorbance spectroscopy data from replicates reads recorded as part of the given absorbance quantification protocol.
PlotAbsorbanceSpectroscopy -- Generates a line plot of the absorbance as a function of wavelength of the provided absorbance spectroscopy data.
Absorbance -- Extracts and returns the absorbance readings at a given wavelength from the provided absorbance spectra.
Concentration -- Applies Beer's law to determine the concentration when provided the absorbance, path length, and extinction coefficient.
PathLength -- Given either ultrasonic liquid level detection data, or absorbance spectroscopy data of a water based buffer (using the Raman scattering of water), calculates an estimate of the path length of a plate based sample.
PlotNMR -- Generates a line or waterfall plot of detector intensity as a function of chemical shift with traditionally depicted inverted x-axis for chemical shift of the provided Nuclear Magnetic Resonance (NMR) data.
PlotNMR2D -- Generates a contour plot of detector intensity as a function of chemical shift of the directly (F2) and indirectly (F1) measured nuclei, with traditionally depicted inverted x-axis for chemical shift of the provided Nuclear Magnetic Resonance (NMR) data.
PlotCircularDichroism -- Generates a line plot of the circular dichroism (mdeg) as a function of the wavelength (nm) from the provided circular dichroism data objects.
PlotFluorescenceIntensity -- Generates a histogram or box-and-whisker plot from the provided fluorescent intensity data.
PlotFluorescenceSpectroscopy -- Generates a line plot of fluorescent intensity as a function of wavelength from the provided fluorescence spectroscopy data.
PlotLuminescenceSpectroscopy -- Generates a line plot of relative luminescence as a function of wavelength from the provided luminescence spectroscopy data.
PlotIRSpectroscopy -- Generates a plot of the IR transmittance as a function of wavenumber from the provided infrared spectroscopy data.
PlotMassSpectrometry -- Generates a line plot of detector intensity vs mass per charge (m/z) of an ionized particle from the provided mass spectrometry data.
PlotTimeSlice -- Generates a line plot of slices of a 3D field at given Time for the input Object.
PlotNephelometry -- Generates a plot of the raw relative nephelometric measurement (RNU) as a function of the concentration of samples in the provided nephelometry data.
PlotNephelometryKinetics -- Generates a plot of the raw relative nephelometric measurement (RNU) as a function of time of samples in the provided nephelometry kinetics data. A 3D plot can be displayed when dilutions with different concentration of the samples are measured.
PlotPowderXRD -- Generates a line plot of X-ray intensity as a function of diffraction angle from the provided powder X-ray diffraction data.
PlotRamanSpectroscopy -- Generates a line plot of the average Raman spectrum from the provided Raman spectroscopy data, as well as the sampling path and individual Raman spectra for each sampling position.
PlotDissolvedOxygen -- Generates a line plot of the dissolved oxygen data.
PlotDynamicLightScattering -- Generates a list line plot of intensity vs. particle size from dynamic light scattering data.
Bioassays
PlotELISA -- Displays the absorbance, fluorescence, or analyte concentration vs dilution factors for the supplied ELISA data.
PlotDNASequencing -- Generates a plot of the raw fluorescence data versus scan number from the provided DNA sequencing data.
PlotDNASequencingAnalysis -- Generates a plot that identifies bases and quality values from a DNA sequencing analysis plot.
PlotAlphaScreen -- Displays the result of an alpha screen experiment.
PlotBioLayerInterferometry -- Generates a line plot of bio-layer thickness as a function of time from the provided bio-layer interferometry (BLI) data.
PlotBindingKinetics -- Generates a plot comparing the prediction of fitted binding kinetics parameters to the source bio-layer interferometry data in the provided binding kinetics analysis object.
PlotBindingQuantitation -- Generates a plot of the observed binding rate as a function of concentration showing the bio-layer thickness during the quantitation step from the provided BLI analysis object.
PlotEpitopeBinning -- Generates a graph or table showing the groupings of samples with respect to the interactions with a particular target from a provided BLI experimental protocol.
Filtration
PlotCrossFlowFiltration -- Generates plots of all data collected in a cross-flow filtration experimental protocol.
Gel Electrophoresis
PlotAgarose -- Generates pixel intensity plots of the agarose gel lane images from the provided AgaroseGelElectrophoresis data.
PlotPAGE -- Generates pixel intensity plots of the PAGE lane images from the provided PAGE data.
PlotWestern -- Generates a line plot of luminescence as a function of molecular weight from the mass spectrum in the provided Western blot data.
PlotCapillaryIsoelectricFocusing -- Generates a graphical plot of the data stored in a Capillary Isoelectric Focusing data object.
PlotCapillaryIsoelectricFocusingEvolution -- Generates a graphical plot of the separation evolution data for CapillaryIsoelectricFocusing data or protocol objects.
PlotCapillaryGelElectrophoresisSDS -- Generates a graphical plot of the data stored in Capillary Gel Electrophoresis SDS data.
Kinetics
PlotAbsorbanceKinetics -- Generates a line plot of absorbance intensity as a function of time from the provided absorbance kinetics data.
PlotFluorescenceKinetics -- Generates a line plot of fluorescence intensity as a function of time from the provided fluorescence kinetics data.
PlotLuminescenceKinetics -- Generates a line plot of luminescence intensity as a function of time from the provided luminescence kinetics data.
PlotKineticRates -- Generates a line plot of concentration vs time of the predicted kinetic rate fitting from the given kinetic analysis overlaid with the provided source data.
PlotTrajectory -- Generates a line plot of concentration as a function of time from the provided kinetic simulation object or trajectory representation.
Microscopy
PlotMicroscope -- Generates an image of the microscope data with frame labels indicating the real-world distances of the items seen in the image in the provided microscope data.
PlotMicroscopeOverlay -- Generates a combined false color image of two or more microscope images taken with different filters from the provided microscope overlay analysis object.
PlotCellCount -- Generates an image of the microscope data with the putative cell areas indicated from the provided cell counting image analysis highlighted.
PlotCellCountSummary -- Generates an image of the microscope data with the putative cell areas highlighted, along with a pie cart of relative areas of cell groupings from the provided cell counting image analysis highlighted.
PlotColonies -- Generates a graphical representation of the number of colonies or plaques.
PlotImageExposure -- Generates a graphical representation of the provided exposure analysis object.
ImageMask -- Replaces all the pixels in the input image that are outside of a given color range.
ImageOverlay -- Overlays the pixel information from two images to combine them into one.
CombineFluorescentImages -- Generates a false color RGB image of the provided composite fluorescent data.
Nucleic Acids
PlotProbeConcentration -- Generates a plot of bound probe concentration as a function of strand position from the provided probe selection simulation.
PlotReactionMechanism -- Generates a graphical representation of a system of nucleic acid reactivity from a provided reaction mechanism.
PlotState -- Generates a pie chart of relative concentrations of each species in a provided state representation.
PCR
PlotqPCR -- Generates a line plot of the normalized fluorescence intensity as a function of replication cycle from the provided qPCR data.
PlotQuantificationCycle -- Generates a list plot of fluorescence intensity as a function of replication cycle with the quantification cycle (Cq) interpolated and highlighted from the provided quantification cycle analysis object.
PlotCopyNumber -- Generates a line plot of the fitted standard curve relating quantification cycle (Cq) to Log10[copy number] from the provided copy number analysis object.
PlotFluorescenceThermodynamics -- Generates a path plot of fluorescence intensity as a function of temperature from melting and cooling curves from the provided fluorescence thermodynamics data.
PlotDigitalPCR -- Generates a plot using the flourescence signal amplitute values provided in the specified Data object.
Sample Preparation and Diagnostics
PlotpH -- Generates a column chart of pH measurements from the provided pH data objects.
PlotSensor -- Generates a line plot of the sensor reading as a function of the date and time from the provided ECL Sensor Array data.
PlotVacuumEvaporation -- Generates a line plot of temperature and pressure as a function of the date and time from the provided vacuum evaporation data.
PlotVolume -- Generates a histogram or box-and-whisker plot of the distance recorded by ultrasonic sensors in order to determine volume from the provided volume data.
Surface Tension
PlotSurfaceTension -- Generates a list plot of surface tension as a function of concentration from the provided surface tension data.
PlotCriticalMicelleConcentration -- Generates a list plot showing the critical micelle concentration above which surface tension is constant from the provided critical micelle concentration analysis object.
Property Measurement
PlotConductivity -- Generates a column chart of conductivity measurements from the provided conductivity data objects.
PlotCyclicVoltammetry -- Generates a plot of the raw voltammogram showing the potential difference in millivolts versus the current in microAmperes from the provided cyclic voltammetry data objects.
PlotDynamicFoamAnalysis -- Generates plots of the foam height, foam volume, bubble count, mean bubble area, average bubble radius and liquid content over time from the provided dynamic foam analysis data objects.
Thermodynamics
PlotAbsorbanceThermodynamics -- Generates a path plot of absorbance as a function of temperature from melting and cooling curves recorded in the provided absorbance thermodynamics data.
PlotDifferentialScanningCalorimetry -- Generates a line plot of differential enthalpy as a function of temperature from the provided differential scanning calorimetry (DSC) data.
PlotFluorescenceThermodynamics -- Generates a path plot of fluorescent intensity as a function of temperature from melting and cooling curves recorded in the provided fluorescence thermodynamics data.
PlotMeltingPoint -- Generates a list plot of the source melting curve analysis along with a demarcation of the fitted melting point.
PlotThermodynamics -- Generates a Van't Hoff plot log of Keq as a function of inverse temperature and the fitted line containing the thermodynamic parameters from the provided thermodynamic analysis object.
Plotting Positions
PlotLocation -- Generates an interactive plot of the location of an object or position within the ECL facility where it is presently located.
PlotContents -- Generates an interactive plot of the current contents of a given container or position within an ECL facility.
Curve Fitting
PlotFit -- Generates a plot of the source data of a fit overlaid with a line of the fitted equation from a provided fit analysis object.
PlotFitPreview -- Displays a plot for the calculated fit function overlaid on the input data.
PlotPrediction -- Generates a plot of the source data of a fit overlaid with a line of the fitted equation from a provided fit analysis object along with a line intersecting the fit using the given value and its predicted result via the fit.
PlotSmoothing -- Generates a line plot of smooth data along with the original un-smoothed data points from a provided smoothing analysis object.
PlotStandardCurve -- Generates a plot of a fitted standard curve overlaid with the data points use to fit it, and the input points the standard was applied to from the provided standard curve analysis object.
ValidPlotFitQ -- Returns an Emerald Test Summary which contains the test results of running PlotFit function on a given input, or a single Boolean indicating validity.
Model Visualization
PlotGlycan -- Generates a graphic of the visual representation corresponding to a commonly accepted abbreviation of the glycan.
PlotProtein -- Generates a ribbon diagram of the structure from the provided protein model.
PlotTranscript -- Generates visualizations of any stored structures in the provided transcript model.
PlotVirus -- Displays a visualization of the provided virus model.
PlotGlycanSequence -- Plots the graphical glycan sequence according to the input.
PlotMolecule -- Displays a line structure for the specified molecule.